View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_31 (Length: 345)
Name: NF4005_low_31
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 47164831 - 47164517
Alignment:
| Q |
17 |
ctatcctatgcaatcccctcacgacatcctaaagttgaaatcatgaagcactattagcgcatggaaactggtaacaaatcttaccnnnnnnnnatagggt |
116 |
Q |
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| T |
47164831 |
ctatcctatgtaatcccctcacgacatcctaaagttgaaatcatgaagcactattagcgcatggaaactggtaacaaatcttacctttttttaatagggt |
47164732 |
T |
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| Q |
117 |
tcactctcctcattcagtcttgacgctcagtgatcaaaccaaactaacctaactccactataaaactatatgactcaatgggaaggattctttaatcata |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47164731 |
tcactctcctcattcagtcttgacactcagtgatcaaaccaaactaacctaactccactataaaactatatgactcaatgggaaggattctttaatcata |
47164632 |
T |
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| Q |
217 |
tgtaagaccttattacaccaggttcttgacgtctgatgtgagactctaagttggattcatgaaattaaaccctccttgcacggtaaaatacgaagtaaat |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47164631 |
tggaagaccttattacaccaggttcttgacgtctgatgtgagactctaagttggattcatg-----aaaccctccttgcacggtaaaatacgaagtaaat |
47164537 |
T |
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| Q |
317 |
tgctcattgattagaattat |
336 |
Q |
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|||||| ||||||||||||| |
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| T |
47164536 |
tgctcagtgattagaattat |
47164517 |
T |
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