View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_34 (Length: 333)
Name: NF4005_low_34
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 43187207 - 43186893
Alignment:
| Q |
1 |
aatgatatatagagctgcagcatttaggccggtgacgaatttgggtttggaagtgatggaaaagcctaaaaggaagaatgttaagatatcaaaggatcca |
100 |
Q |
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| T |
43187207 |
aatgatatatagagctgcagcatttaggccggtgacgaatttgggtttggaagtgatggaaaagcctaaaaggaagaatgttaagatatcaaaggatcca |
43187108 |
T |
|
| Q |
101 |
caaactgtggcggctaggcaaagaagggaaagaataagtgaaaggattagagtcttgcagaagattgttcctggtggaaccaagatggacactgcatcaa |
200 |
Q |
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| T |
43187107 |
caaactgtggcggctaggcaaagaagggaaagaataagtgaaaggattagagtcttgcagaagattgttcctggtggaaccaagatggacactgcatcaa |
43187008 |
T |
|
| Q |
201 |
tgcttgatgaagctgctaattacctcaagtttcttagagcacaagtcaaagaactggagaatataggaaacaagattgatacagtgaataattgtcctcc |
300 |
Q |
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| T |
43187007 |
tgcttgatgaagctgctaattacctcaagtttcttagagcacaagtcaaagaactggagaatataggaaacaagattgatacagtgaataattgtcctcc |
43186908 |
T |
|
| Q |
301 |
tacaaacatagcctt |
315 |
Q |
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| T |
43186907 |
tacaaacatagcctt |
43186893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 5040825 - 5040653
Alignment:
| Q |
60 |
aaaagcctaaaaggaagaatgttaagatatcaaaggatccacaaactgtggcggctaggcaaagaagggaaagaataagtgaaaggattagagtcttgca |
159 |
Q |
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| T |
5040825 |
aaaagccgaagaggaagaatgtaaagatatcaaatgatcctcaaactgttgctgcaaggcatagaagagaaagaataagtgaaagaattagggttttgca |
5040726 |
T |
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| Q |
160 |
gaagattgttcctggtggaaccaagatggacactgcatcaatgcttgatgaagctgctaattacctcaagttt |
232 |
Q |
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| T |
5040725 |
aaagattgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagttt |
5040653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 6259559 - 6259698
Alignment:
| Q |
74 |
aagaatgttaagatatcaaaggatccacaaactgtggcggctaggcaaagaagggaaagaataagtgaaaggattagagtcttgcagaagatt-gttcct |
172 |
Q |
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| T |
6259559 |
aagaatgtgaagatttcaaaggatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattaca-aagattagtacct |
6259657 |
T |
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| Q |
173 |
ggtggaaccaagatggacactgcatcaatgcttgatgaagc |
213 |
Q |
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| T |
6259658 |
ggtggaacaaaaatggacactgcttctatgttagatgaagc |
6259698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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