View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_35 (Length: 332)
Name: NF4005_low_35
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 33586236 - 33586511
Alignment:
| Q |
4 |
aaaggaaccgagtggactgaggtaagaaagaagaaaaataagattctaggctctagaggaaacaataaattaagcaaagagtgaaaacctgataaagctc |
103 |
Q |
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| T |
33586236 |
aaaggaaccgagtggaatgaggtaagaaagaagaaaaataagattctaggctctagaggaaacaataaattaagcaaagagtgaaaacctgataaagctc |
33586335 |
T |
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| Q |
104 |
aagtaagctattaagtatggattaacaaagtgatgatgaaataaacaagagttggaataatataaataaaatnnnnnnnnctaaccagcaattaaggaag |
203 |
Q |
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| T |
33586336 |
aagtaagctattaagtatggattaacaaagtgatgatgaaataaacaagagttggaataatataaataaaat-aaaaaaactaaccagcaattaaggaag |
33586434 |
T |
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| Q |
204 |
aggaaggtaacttggaatgagatcaatgaaaattaggtagaatgaaattgatagagagtgtagaagccaataataat |
280 |
Q |
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| T |
33586435 |
aggaaggtaacttggaatgagatcaatgaaaattaggtagaatgaaattgatagagagtgtagaagccaataataat |
33586511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 33586541 - 33586569
Alignment:
| Q |
301 |
gtttgaaaaggaagaagaaagtgatgatg |
329 |
Q |
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| T |
33586541 |
gtttgaaaaggaagaagaaagtgatgatg |
33586569 |
T |
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