View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_36 (Length: 331)
Name: NF4005_low_36
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 41416869 - 41416591
Alignment:
| Q |
24 |
aaaagatgatgagttgaagatcctaaatttcaagctcggttggagagaaatattaatctaacaattaattattaatatttgtctaatttatttaggtgca |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41416869 |
aaaagatgatgagttgaagatcctaaatttcaagctcggttggagagaaatattaatctaacaattaatttctaatatttgtctaatttatttaggtgca |
41416770 |
T |
|
| Q |
124 |
tcatatgcaatcggtatggagtaaaaacacgcacgctagttaaacaaattcagagtcaaatgttagnnnnnnncccatgatatatatgtttgctgtttat |
223 |
Q |
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| T |
41416769 |
ttatatgcaatcggtatggagtaaaaacacgcatgctagttaaaaaaaatcagagtcaaatgttagtttttttcccatg----aaatgtttgctgtttat |
41416674 |
T |
|
| Q |
224 |
taatgttacgcttcttg-ttcttttcatttattgggataaatttaaaggttaatttctgaggagtgtactctgtaatattata |
305 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41416673 |
taatgttacgcttcttgtttcttttcatttattgggataaatttaaaggttaatttctgaggagtgtactgtgtaatattata |
41416591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 12005161 - 12005192
Alignment:
| Q |
71 |
aaatattaatctaacaattaattattaatatt |
102 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
12005161 |
aaatattaatctaacaattaattattaatatt |
12005192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 3294553 - 3294518
Alignment:
| Q |
71 |
aaatattaatctaacaattaattattaatatttgtc |
106 |
Q |
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| T |
3294553 |
aaatattaatctaacaattaattactaatatttgtc |
3294518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 10156340 - 10156375
Alignment:
| Q |
71 |
aaatattaatctaacaattaattattaatatttgtc |
106 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |
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| T |
10156340 |
aaatattaatctaacaattaactattaatatttgtc |
10156375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 40124920 - 40124955
Alignment:
| Q |
71 |
aaatattaatctaacaattaattattaatatttgtc |
106 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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|
| T |
40124920 |
aaatattaatctaacaattaattgttaatatttgtc |
40124955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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