View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_37 (Length: 324)
Name: NF4005_low_37
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 39700406 - 39700109
Alignment:
| Q |
11 |
cagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgat |
110 |
Q |
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| T |
39700406 |
cagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgat |
39700307 |
T |
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| Q |
111 |
gctctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatca |
210 |
Q |
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| T |
39700306 |
gctctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatca |
39700207 |
T |
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| Q |
211 |
acaacatnnnnnnnntatgatcatccttttagcatttatacctagttgatggactcaaattgtttgcaagaacatttgatacgttgcgacgtgcattt |
308 |
Q |
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| T |
39700206 |
acaacataaaaaaaatatgatcatccttttaacatttatacctagttgatggactcaaattgtttgcaagaacatttgatacgttgtgacgtgtattt |
39700109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 39691214 - 39691015
Alignment:
| Q |
14 |
agaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgatgct |
113 |
Q |
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| T |
39691214 |
agaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgct |
39691115 |
T |
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| Q |
114 |
ctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatcaaca |
213 |
Q |
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| T |
39691114 |
cttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataa-ttaatcaaca |
39691016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 39931003 - 39931202
Alignment:
| Q |
14 |
agaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgatgct |
113 |
Q |
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| T |
39931003 |
agaaagaaccaaagaaagaatcagcaacgattgcggccactactggaaatatactggtgcttccaacgacaacatttgaaatttgagttgcagtgatgct |
39931102 |
T |
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| Q |
114 |
ctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatcaaca |
213 |
Q |
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| T |
39931103 |
ctttatattgaattctcttgtaagatatacaatcaagtttccaacaattccggtgcttccaagtgacatccccgctatcatacctatagtttattcaaca |
39931202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 39935259 - 39935391
Alignment:
| Q |
11 |
cagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgat |
110 |
Q |
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||||||| || |||||||| |||||||||| ||||| ||||||| | | ||| ||| |||||| | ||||| ||||||||| ||||| ||| |||| |
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| T |
39935259 |
cagagaaggatccaaagaatgaatcagcaacaattgcggcaatgaatagaaatt--ttgatgcttccgataacaatgtttacaatctgagcagcaatgat |
39935356 |
T |
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| Q |
111 |
gctctttatattgaattcttttataagatatacaa |
145 |
Q |
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| T |
39935357 |
gctctttatattgaattcttgtataagatatacaa |
39935391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 38187169 - 38187115
Alignment:
| Q |
62 |
atagattggagcttccaacaacaacgtttacaatttgagctgcattgatgctctt |
116 |
Q |
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|||||| ||||||||| |||||| |||||||||||||| |||| |||||||||| |
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| T |
38187169 |
atagatcggagcttccttcaacaaggtttacaatttgagttgcagtgatgctctt |
38187115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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