View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_38 (Length: 315)
Name: NF4005_low_38
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 20203723 - 20204010
Alignment:
| Q |
13 |
catcataatccttcaagtacttgaggaggatcttgattctcttgggccagacttgagaaggttagatcatgttgtcctcgtcaactatccattcatcacc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203723 |
catcataatccttcaagtacttgaggaggatcttgattctcttgggccagacttgagaaggttagatcatgttgtcctcgtcaactatccattcatcacc |
20203822 |
T |
|
| Q |
113 |
agtgccttggcccataacaaatagccttttagnnnnnnnnnn---gagggagaaacaattttcattaaacaaagtctggtatcaaatcaaacgccaagac |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203823 |
agtgccttggcccataacaaatagccttttagtttttttttttttgagggagaaacaattttcattaaacaaagtctggtatcaaatcaaacgccaagac |
20203922 |
T |
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| Q |
210 |
atcaaaaatgcaactaggagcatctctaaatccaaacacaatctggatttgaaatagcaaattttgcaagatagtgtactgcttgatt |
297 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203923 |
atcaaaaatacaactaggagcatctctaaatccaaacacaatctggatttgaaatagcaaattttgcaagatagtgtactgcttgatt |
20204010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 22097746 - 22098033
Alignment:
| Q |
13 |
catcataatccttcaagtacttgaggaggatcttgattctcttgggccagacttgagaaggttagatcatgttgtcctcgtcaactatccattcatcacc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097746 |
catcataatccttcaagtacttgaggaggatcttgattctcttgggccagacttgagaaggttagatcatgttgtcctcgtcaactatccattcatcacc |
22097845 |
T |
|
| Q |
113 |
agtgccttggcccataacaaatagccttttagnnnnnnnnnn---gagggagaaacaattttcattaaacaaagtctggtatcaaatcaaacgccaagac |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097846 |
agtgccttggcccataacaaatagccttttagtttttttttttttgagggagaaacaattttcattaaacaaagtctggtatcaaatcaaacgccaagac |
22097945 |
T |
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| Q |
210 |
atcaaaaatgcaactaggagcatctctaaatccaaacacaatctggatttgaaatagcaaattttgcaagatagtgtactgcttgatt |
297 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097946 |
atcaaaaatacaactaggagcatctctaaatccaaacacaatctggatttgaaatagcaaattttgcaagatagtgtactgcttgatt |
22098033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 20193798 - 20193914
Alignment:
| Q |
15 |
tcataatccttcaagtacttgaggaggatcttgattctcttgggccagacttgagaaggttagatcatgttgtcctcgtcaactatccattcatcaccag |
114 |
Q |
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||||||||||||||||||||| || | ||||| |||||||||| | | ||||||||||| || |||||||||||| | | |||||||||||||| ||| |
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| T |
20193798 |
tcataatccttcaagtacttggggtgagtcttgtttctcttgggtcttagttgagaaggttggaccatgttgtcctcataagctatccattcatcatcag |
20193897 |
T |
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| Q |
115 |
tgccttggcccataaca |
131 |
Q |
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|| | |||||||||||| |
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| T |
20193898 |
tgtcatggcccataaca |
20193914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 22087821 - 22087937
Alignment:
| Q |
15 |
tcataatccttcaagtacttgaggaggatcttgattctcttgggccagacttgagaaggttagatcatgttgtcctcgtcaactatccattcatcaccag |
114 |
Q |
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||||||||||||||||||||| || | ||||| |||||||||| | | ||||||||||| || |||||||||||| | | |||||||||||||| ||| |
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| T |
22087821 |
tcataatccttcaagtacttggggtgagtcttgtttctcttgggtcttagttgagaaggttggaccatgttgtcctcataagctatccattcatcatcag |
22087920 |
T |
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| Q |
115 |
tgccttggcccataaca |
131 |
Q |
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|| | |||||||||||| |
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| T |
22087921 |
tgtcatggcccataaca |
22087937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 41866278 - 41866386
Alignment:
| Q |
173 |
attaaacaaagtctggtatcaaatcaaacgccaagacatcaaaaatgcaactaggagcatctctaaatccaaacacaatctggatttgaaatagcaaatt |
272 |
Q |
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||||||||| | ||| ||||||||||| |||||||||||| |||| ||||||| | |||| | |||||||||| |||| |||||||||| |||||||| |
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| T |
41866278 |
attaaacaatgactgacatcaaatcaaatgccaagacatcataaatacaactagaaatatct-tcaatccaaacataatccggatttgaaagagcaaatt |
41866376 |
T |
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| Q |
273 |
ttgcaagata |
282 |
Q |
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|||| ||||| |
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| T |
41866377 |
ttgctagata |
41866386 |
T |
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