View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_4 (Length: 670)
Name: NF4005_low_4
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_4 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 12 - 652
Target Start/End: Original strand, 43102197 - 43102837
Alignment:
| Q |
12 |
atgaatgaagtagtttgaattagaatcccgatagaagcaatggttacggtggggtccacaagtaaaccacataaaatgatcattacttcataccaccacc |
111 |
Q |
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| T |
43102197 |
atgaatgaagtagtttgaattagaatcccgatagaagcaatggtaacggtggggtccacaagtaaaccacataaaatgatcattacttcataccaccacc |
43102296 |
T |
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| Q |
112 |
attccaaacaaacggaaacgcagcttggcgtggcaagtcggagtaaaggcttccagccggtgagacactcctggcttggtgctgtccaagttgtgcggtg |
211 |
Q |
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| T |
43102297 |
attccaaacaaacggaaacgcagcttggcgtggcaagtcggagtaaaggcttccagccggtgagacactcctgacttggtgctgtccaagttgtgcggtg |
43102396 |
T |
|
| Q |
212 |
taagcccgttaaccaaacataagcgatgaggaacaacacaatgaagaggttggaggctgcagaggcagctggaactccggtgaaaccgaagtgaaagaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43102397 |
taagcccgttaaccaaacataagcgatgaggaacaatacaatgaagaggttggaggctgcagaggcagctgggactccggtgaaaccgaagtgaaagaca |
43102496 |
T |
|
| Q |
312 |
aacaagtaatttagaggaagatggaggagagtgccagcaagtgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtatagggt |
411 |
Q |
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| T |
43102497 |
aacaagtaatttagaggaagatggaggagagtgccagcaagtgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtatagggt |
43102596 |
T |
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| Q |
412 |
ggatgaatgaatttgtgatgagatcagggagagagaatattagatatgtgtgagccatggctgtgatctttgggttctggtgcaaccaaatgaggatttg |
511 |
Q |
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| T |
43102597 |
ggatgaatgaatttgtgatgagatcagggagagagaatattagatatgtgtgagccatggctgtgatctttgggttctggtgcaaccaaatgaggatttg |
43102696 |
T |
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| Q |
512 |
tgacatgttaagccacatgaaggaaatgggaatggaacatagtaataggaagaggatgcaacgttgaagtgttaaggataggagtttaggacggtttgct |
611 |
Q |
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| T |
43102697 |
tgacatgttaagccacatgaaggaaatgggaatggaacatagtaataggaagaggatgcaacgttgaagtgttaaggataggagtttaggacggtttgct |
43102796 |
T |
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| Q |
612 |
ccgaaggcttgtgaacaaagaggttccattccgagagagag |
652 |
Q |
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| T |
43102797 |
ccgaaggcttgtgaacagagaggttccattccgagagagag |
43102837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 640
Target Start/End: Complemental strand, 33948749 - 33948682
Alignment:
| Q |
573 |
cgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacaaagaggttccat |
640 |
Q |
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| T |
33948749 |
cgttgaagtgttaatgatagaagttttggacggttagcaccaaaggcttgagaacaaagaggttccat |
33948682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 24282 - 24241
Alignment:
| Q |
98 |
ttcataccaccaccattccaaacaaacggaaacgcagcttgg |
139 |
Q |
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| T |
24282 |
ttcataccaccaccattccaagcagacagaaacgcagcttgg |
24241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 51875031 - 51874979
Alignment:
| Q |
78 |
ccacataaaatgatcattacttcataccaccaccattccaaacaaacggaaac |
130 |
Q |
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| T |
51875031 |
ccacacaaaattatcatgagttcataccaccaccattctaaacaaacagaaac |
51874979 |
T |
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