View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_40 (Length: 311)
Name: NF4005_low_40
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 48109544 - 48109262
Alignment:
| Q |
17 |
acttcaaatctacgtgacacaattgtgtcatttatttacgtagatgcgatctgcttcagacaccacttgaattgaagagttcaattttcatgcattttgt |
116 |
Q |
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| T |
48109544 |
acttcaaatctacgtgacacaactgtgtcatttatttacgtagatgcgatctgcttcagacaccacttgaattgaagagttcaattttcatgcattttgt |
48109445 |
T |
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| Q |
117 |
gcaaaattcattacattgattattgatattatagtacattagaatttgatttgacatattaattaacaatatcaatcgattattagcaaaacaacgaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
48109444 |
gcaaaattcattacattgattattgatattatagtacattagaatttgatttgacatattaattaagaatatcaatcgattattagc--aacaacgaaaa |
48109347 |
T |
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| Q |
217 |
atctaagaaatgatttcacgggacatcattggagtctccaatccatatctgacaatattgctcaaagcattatattatgtctgtg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
48109346 |
atctaagaaatgatttcacgggacatcattggagtctccaatccatatctgacattattgctcaaagcattatagtatgtctgtg |
48109262 |
T |
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