View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_45 (Length: 284)
Name: NF4005_low_45
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 30505784 - 30505681
Alignment:
| Q |
22 |
gaatgtacttttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatctttgcttactcctgaagaaa |
121 |
Q |
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| T |
30505784 |
gaatgtacctttcttctttttctagttcctgttgtgtatgccttggatggccggtgaaagaaatggcggatcagtccatctttgcttactcctgaagaaa |
30505685 |
T |
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| Q |
122 |
tata |
125 |
Q |
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|||| |
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| T |
30505684 |
tata |
30505681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 30513186 - 30512965
Alignment:
| Q |
21 |
tgaatgtacttttcttctttttcttgttcctgttgtgtatgcc-ttggatggtcgatgaaagaaatggcggatcaggccatctttgcttactcctgaaga |
119 |
Q |
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| T |
30513186 |
tgaatgtacctttcttctttttcttgttcctgttgtgtatgcctttggatggtcggtgaatgaaatgccggatcagtccatctttgcttactccggacga |
30513087 |
T |
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| Q |
120 |
aatatatataattcaatttagatgtacattcactactataggtgataatatatatagtgaaaatagcttgctatatagaatgttatctaaggaagaacca |
219 |
Q |
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| T |
30513086 |
a----atataattcaatgcagattttaattcactgctacatgtg-ta----atatagtgaaaatagctttctacatataatgttatctaaggaggaactg |
30512996 |
T |
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| Q |
220 |
catataaatagataaataagaagctaggtacca |
252 |
Q |
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|||| |||||||||||||||| ||||||||| |
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| T |
30512995 |
aatat--atagataaataagaagttaggtacca |
30512965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 34830090 - 34830163
Alignment:
| Q |
31 |
tttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatcttt |
104 |
Q |
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| T |
34830090 |
tttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaagaagtgccggatctgtccatcttt |
34830163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 38886939 - 38886852
Alignment:
| Q |
28 |
acttttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatctttgcttactcctg |
115 |
Q |
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| T |
38886939 |
acttttcttctttttcttgttcctgttgtgtatgcttttgatggcctgtgaaagaaatgtcggatcagtccatctttgccgactcctg |
38886852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 4235647 - 4235563
Alignment:
| Q |
31 |
tttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatctttgcttactcctg |
115 |
Q |
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| T |
4235647 |
tttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatctttgctaactcctg |
4235563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 28948945 - 28949018
Alignment:
| Q |
31 |
tttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatcttt |
104 |
Q |
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| T |
28948945 |
tttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtgccggatctgtccatcttt |
28949018 |
T |
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