View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4005_low_47 (Length: 274)

Name: NF4005_low_47
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4005_low_47
NF4005_low_47
[»] chr5 (3 HSPs)
chr5 (1-41)||(38755749-38755789)
chr5 (1-40)||(41715170-41715209)
chr5 (1-31)||(7237068-7237098)
[»] chr1 (3 HSPs)
chr1 (1-38)||(28666901-28666938)
chr1 (1-41)||(7440960-7441000)
chr1 (6-42)||(41941221-41941257)
[»] chr8 (1 HSPs)
chr8 (1-41)||(14958143-14958183)
[»] chr7 (1 HSPs)
chr7 (1-37)||(15077104-15077140)
[»] chr6 (2 HSPs)
chr6 (1-41)||(9627132-9627172)
chr6 (1-41)||(33908569-33908609)
[»] chr2 (1 HSPs)
chr2 (8-38)||(38288434-38288464)
[»] chr4 (1 HSPs)
chr4 (1-41)||(865235-865275)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38755749 - 38755789
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgttgtt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38755749 ctttcgttctcttatttaatcttttgttactagttgttgtt 38755789  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41715170 - 41715209
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgttgt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41715170 ctttcgttctcttatttaatcttttgttactagttgttgt 41715209  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7237098 - 7237068
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttact 31  Q
    |||||||||||||||||||||||||||||||    
T  7237098 ctttcgttctcttatttaatcttttgttact 7237068  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28666901 - 28666938
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgtt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28666901 ctttcgttctcttatttaatcttttgttactagttgtt 28666938  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7440960 - 7441000
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgttgtt 41  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  7440960 ctttcgttctcttatttaatcttatgttactagatgttgtt 7441000  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 41941221 - 41941257
Alignment:
Q  6 gttctcttatttaatcttttgttactagttgttgttt 42  Q
    |||||||||||||||||| |||||||||| |||||||    
T  41941221 gttctcttatttaatcttctgttactagtcgttgttt 41941257  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14958143 - 14958183
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgttgtt 41  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  14958143 ctttcgttctcttgtttaatcttttgttactagttgttgtt 14958183  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15077140 - 15077104
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgt 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  15077140 ctttcgttctcttatttaatctgttgttactagttgt 15077104  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9627172 - 9627132
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgttgtt 41  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  9627172 ctttcattctcttatttaatcttttgtttctagttgttgtt 9627132  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33908609 - 33908569
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgttgtt 41  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  33908609 ctttcgttctcttatttaatattttgttactagttgctgtt 33908569  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 38288464 - 38288434
Alignment:
Q  8 tctcttatttaatcttttgttactagttgtt 38  Q
    |||||||||||||||||||||||||||||||    
T  38288464 tctcttatttaatcttttgttactagttgtt 38288434  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 865275 - 865235
Alignment:
Q  1 ctttcgttctcttatttaatcttttgttactagttgttgtt 41  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  865275 ctttcgttctcttatttaattttttgttactgattgttgtt 865235  T

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