View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_49 (Length: 271)
Name: NF4005_low_49
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 23278066 - 23278298
Alignment:
| Q |
14 |
catcaccaccgtaaactttcttggcaacctgaggagaaagatcgatatccatagcaacaacaca-aaaatcgaacgatcaaacgaaaaagtaaaggaaag |
112 |
Q |
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| T |
23278066 |
catcgccaccgtaaactttcttggcaacctgaggagaaagatcgatatccatagcaacaacgcacaaaatcgaacgatcacacgaaaaaacaattgaa-g |
23278164 |
T |
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| Q |
113 |
agaaaattttgaagagaatgtgtttttgagtgcatgtgggttaggtgtgtatttataagtatattggatcgtgattttagtggaagtgaaacggaatttg |
212 |
Q |
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| T |
23278165 |
agaaaa--------aga-tgtgtttttgattgcatgtgg-ttaggtgtgtatttataagtatattggatcgtgagtttagtggaagtgaaacggaatttg |
23278254 |
T |
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| Q |
213 |
ttgtatgtagatagtgttgaaaagggtgtgattagtgttgatcc |
256 |
Q |
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| T |
23278255 |
ttgtatgtagatagtgttgaaaagggtgtgattagtgttgatcc |
23278298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 27544092 - 27544190
Alignment:
| Q |
14 |
catcaccaccgtaaactttcttggcaacctgaggagaaagatcgatatccatagcaacaacacaaaaatcgaacgatcaaacgaaaaagtaaaggaaag |
112 |
Q |
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| T |
27544092 |
catcaccaccgtacactttcttagccaattgaggagaaagatcgatatccatagcaacaacacaaaaattgaacgatcacacgaaaaagcaaagcaaag |
27544190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 23260176 - 23260299
Alignment:
| Q |
22 |
ccgtaaactttcttggcaacctgaggagaaagatcgatatccatagcaacaacacaaaaatcgaacgatcaaacgaaaaagtaaaggaaagagaaaattt |
121 |
Q |
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| T |
23260176 |
ccgtaaacttccttggccatttgaggagaaagattgatatccatgataacaacacaaaaatcgaacgatcacacaaaaaagcaaagcagaggaaaaaatt |
23260275 |
T |
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| Q |
122 |
tgaagagaatgtgtttttgagtgcatgtgg |
151 |
Q |
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| T |
23260276 |
tg------atgtgtttttgagtgcatgtgg |
23260299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 11134927 - 11134840
Alignment:
| Q |
14 |
catcaccaccgtaaactttcttggcaacctgaggagaaagatcgatatccatagcaacaacacaaaaatcgaacgatcaaacgaaaaa |
101 |
Q |
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| T |
11134927 |
catcaccaccgtacactttctttgccaattgaggagaaagattaatatccatagcaaccaaaacaaaattgaacgatcacacgaaaaa |
11134840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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