View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_5 (Length: 652)
Name: NF4005_low_5
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 11 - 633
Target Start/End: Complemental strand, 5639137 - 5638513
Alignment:
| Q |
11 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639137 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
5639038 |
T |
|
| Q |
111 |
aaaatgaaagaagttccgtgaaaaacactccctctgaactcaaatttaagtaaaattaactaaatacgtactaagtaagaatattagttaagcttgctta |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
5639037 |
aaaatgaaagaagttccgtgaaaaacactccctccgaactcaaatttaagtaaaattaactaaatacgtactaattaagaatattagttaaccttgctta |
5638938 |
T |
|
| Q |
211 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctc-tcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638937 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctcttcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
5638838 |
T |
|
| Q |
310 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgacta-nnnnnnnacttaaatt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5638837 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactattttttttacttaaatt |
5638738 |
T |
|
| Q |
409 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638737 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
5638638 |
T |
|
| Q |
509 |
tcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttata |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638637 |
tcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttata |
5638538 |
T |
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| Q |
609 |
agatctaacttatcaacctgcagca |
633 |
Q |
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| T |
5638537 |
agatctaacttatcaacctgcagca |
5638513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 22965327 - 22965261
Alignment:
| Q |
31 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaagg |
97 |
Q |
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| T |
22965327 |
gttatgcacatcacttaatcatgcaaattttatagttcggacctgcaaattcaggtattaatgaagg |
22965261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 469 - 633
Target Start/End: Original strand, 30634326 - 30634492
Alignment:
| Q |
469 |
tttcagtatacatggaaatccaagaaggtt-atgaa-cagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaat |
566 |
Q |
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|||||||| || |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
30634326 |
tttcagtacacttggaaatctaagttggtttatgaatcagtattacaaatgacactaccatacctggtgatctataactcttgcacttccggtgcagaat |
30634425 |
T |
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| Q |
567 |
cctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagca |
633 |
Q |
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| T |
30634426 |
cctccttctgtggccaatgcatgtcccatagcagcagttataagatctaacttctcaacctgcagca |
30634492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 515 - 633
Target Start/End: Original strand, 21423160 - 21423278
Alignment:
| Q |
515 |
atgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatct |
614 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21423160 |
atgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcagttataagatct |
21423259 |
T |
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| Q |
615 |
aacttatcaacctgcagca |
633 |
Q |
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||||| ||||||||||||| |
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| T |
21423260 |
aacttctcaacctgcagca |
21423278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 38954590 - 38954654
Alignment:
| Q |
31 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaa |
95 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38954590 |
gttatgcacatcgcttaatcatgcaaattttatagtttggacctgcaaattcaggtattaatgaa |
38954654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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