View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4005_low_50 (Length: 268)

Name: NF4005_low_50
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4005_low_50
NF4005_low_50
[»] chr3 (4 HSPs)
chr3 (15-181)||(3936070-3936233)
chr3 (31-178)||(52103419-52103564)
chr3 (116-176)||(2190370-2190430)
chr3 (91-177)||(3936682-3936768)
[»] chr5 (2 HSPs)
chr5 (35-178)||(31607256-31607399)
chr5 (27-178)||(31607956-31608107)
[»] chr7 (2 HSPs)
chr7 (25-178)||(3306652-3306805)
chr7 (38-180)||(3305922-3306064)
[»] chr2 (6 HSPs)
chr2 (25-174)||(15975436-15975585)
chr2 (56-178)||(42149562-42149684)
chr2 (179-268)||(34666399-34666487)
chr2 (38-178)||(15974709-15974849)
chr2 (64-179)||(40321117-40321232)
chr2 (48-180)||(40320239-40320371)
[»] chr6 (4 HSPs)
chr6 (25-178)||(17439865-17440018)
chr6 (38-180)||(17440604-17440746)
chr6 (25-165)||(20666758-20666898)
chr6 (94-165)||(20667461-20667532)
[»] chr1 (5 HSPs)
chr1 (25-179)||(30430342-30430494)
chr1 (31-105)||(10468749-10468823)
chr1 (97-180)||(30429387-30429470)
chr1 (91-165)||(36139704-36139778)
chr1 (35-147)||(36140637-36140748)
[»] chr4 (3 HSPs)
chr4 (97-178)||(27340743-27340824)
chr4 (64-178)||(17869644-17869758)
chr4 (91-178)||(27339716-27339803)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 3936233 - 3936070
Alignment:
Q  15 gagaggcagctatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgt 114  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3936233 gagaggcagctatcagcaatgaagataacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgtcatgt 3936134  T
Q  115 gtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactcatc 181  Q
    ||||||||||||||||||||||||||||||||| | |||   ||||||||||| |||||||||||||    
T  3936133 gtcatttatccatgcattggagaggagtaaatggaggaa---taaatggagcagagatgaactcatc 3936070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 52103419 - 52103564
Alignment:
Q  31 caatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgca 130  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||  |||| ||| | ||||||||| |||||    
T  52103419 caatgaagatgatgagaggaatcaaatgaattagtctctattttaagattttattattaacccttggattta--tttgacatatatcatttatctatgca 52103516  T
Q  131 ttggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
    ||||| ||||||||||| | ||||||||||||||||| ||||||||||    
T  52103517 ttggaaaggagtaaatggaggaatgttaaatggagcaaagatgaactc 52103564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 2190430 - 2190370
Alignment:
Q  116 tcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaac 176  Q
    ||||||||||| |||||||| ||||||||||| | ||||||||||||||||| | ||||||    
T  2190430 tcatttatccaggcattggaaaggagtaaatggaggaatgttaaatggagcaaatatgaac 2190370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 3936682 - 3936768
Alignment:
Q  91 cccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaact 177  Q
    ||||||||||  |||||||||  ||||| |||||  || ||| || |||| |||||| | ||||||||||||||||| |||||||||    
T  3936682 cccttggattggtttttgccacatgtcacttatctgtgaattcgaaaggattaaatggaggaatgttaaatggagcaaagatgaact 3936768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 31607399 - 31607256
Alignment:
Q  35 gaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattgg 134  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||     
T  31607399 gaagatgatgagaggaatcaaatgaattagactctattttaagcttttattattagcccttggatttattttttccatgtgtcatttatccatgcattga 31607300  T
Q  135 agaggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
    | ||||||||||| | ||| ||||||||||||| ||||||||||    
T  31607299 aaaggagtaaatggaggaacgttaaatggagcaaagatgaactc 31607256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 31607956 - 31608107
Alignment:
Q  27 tcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatcca 126  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  31607956 tcaacaatgaagatgatgagaggaatcaaatgaattaggctctactttaagcttttattattaacctttggatttattttttccatgtgtcatttatcca 31608055  T
Q  127 tgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
    ||||||| | || ||||| || | ||||||||||||||||| ||||||||||    
T  31608056 tgcattgaaaagaagtaattggaggaatgttaaatggagcaaagatgaactc 31608107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 3306652 - 3306805
Alignment:
Q  25 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 124  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| || |||||||| |||||||||||| ||| ||||||| |||    
T  3306652 tatcaacaatgaagatgatgagaggaatcaaatgaattaatctctattttaagcttttattactagcccttagatttatttttgtcatatgtcattaatc 3306751  T
Q  125 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
    ||||||||||| ||||||||||| || ||||| |||||||||| ||||||||||    
T  3306752 catgcattggaaaggagtaaatggaaaaatgtaaaatggagcaaagatgaactc 3306805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 3306064 - 3305922
Alignment:
Q  38 gatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggaga 137  Q
    ||||| ||||||||| || | |||| ||||| |||||||  ||||| | ||| || || ||| ||||||||| |||||||||| |||||||||||||| |    
T  3306064 gatgatgagaggaataagttaaattggtctcaattttaacattttaatcttaacctttagatctatttttgctatgtgtcattaatccatgcattggaaa 3305965  T
Q  138 ggagtaaatgaaagaatgttaaatggagcatagatgaactcat 180  Q
    | |||||||| | |||||| |||||||||| ||||||||||||    
T  3305964 gaagtaaatggaggaatgtaaaatggagcaaagatgaactcat 3305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 15975436 - 15975585
Alignment:
Q  25 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 124  Q
    ||||| |||||||||||| ||||||||||| || ||||| ||||||||||||| ||||| || |||| |||||||||||||||||||||||||||| |||    
T  15975436 tatcagcaatgaagatgatgagaggaatcaaataaattaatctctattttaagattttattactagctcttggatttatttttgccatgtgtcattaatc 15975535  T
Q  125 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatga 174  Q
    ||||||||||| ||||||||||| | |||||| |||||||||| ||||||    
T  15975536 catgcattggaaaggagtaaatggaggaatgtaaaatggagcaaagatga 15975585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 42149562 - 42149684
Alignment:
Q  56 atgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatg 155  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| | |||||    
T  42149562 atgaattagtctctattttaagattttattattagcccttggatttatttttgacatatgtcatttatccatgcattgaaaaggagtaaatggaggaatg 42149661  T
Q  156 ttaaatggagcatagatgaactc 178  Q
    |||||||||||| ||||||||||    
T  42149662 ttaaatggagcaaagatgaactc 42149684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 34666399 - 34666487
Alignment:
Q  179 atcaacttgcgcatttttcaaaatagattaatgaaaaatacgatcaatttcaacacatcttttgatattcggagtctctgatatctcctt 268  Q
    ||||||||| ||||||||||||||| ||||||| |||  ||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  34666399 atcaacttgtgcatttttcaaaataaattaatggaaatcacgatcaatttcaacgcatcttttgata-tcggagtctctgatatctcctt 34666487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 178
Target Start/End: Complemental strand, 15974849 - 15974709
Alignment:
Q  38 gatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggaga 137  Q
    ||||| ||||||||| || | |||| |||||  ||||||  ||||| | ||| || || ||| |||||||||||||||||||| |||||||||||| | |    
T  15974849 gatgatgagaggaataagttaaattggtctcagttttaacattttaatcttaacctttagatctatttttgccatgtgtcattaatccatgcattgaaaa 15974750  T
Q  138 ggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
     ||||||||||| |||||| |||||||||| ||||||||||    
T  15974749 tgagtaaatgaaggaatgtaaaatggagcaaagatgaactc 15974709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 40321117 - 40321232
Alignment:
Q  64 gtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatgg 163  Q
    |||||||| |||| | |||| | | ||||||||||||||||||| |||||||||||  ||| |||||||| | ||||||||||| |  || | |||||||    
T  40321117 gtctctatgttaaccatttaatttcagcccttggatttatttttaccatgtgtcatgcatctatgcattgaaaaggagtaaatggagcaaggctaaatgg 40321216  T
Q  164 agcatagatgaactca 179  Q
    |||| |||||||||||    
T  40321217 agcaaagatgaactca 40321232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 40320371 - 40320239
Alignment:
Q  48 ggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatg 147  Q
    ||||| ||||| || ||| | ||| |||| |||||| | | ||||||| ||||||||||| |||||||||||  ||| |||||||| | |||| ||||||    
T  40320371 ggaataagatggataagtgtttatgttaaccttttaatttcagcccttagatttatttttaccatgtgtcatgcatctatgcattgaaaaggattaaatg 40320272  T
Q  148 aaagaatgttaaatggagcatagatgaactcat 180  Q
     |  || | ||||||||||| ||||||||||||    
T  40320271 gagcaaggctaaatggagcaaagatgaactcat 40320239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 17440018 - 17439865
Alignment:
Q  25 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 124  Q
    ||||| |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||| || | ||||||||||||||||||||||||||||||| |||    
T  17440018 tatcagcaatgaagatgatgagaggaatcaaatgaattaatctctattttatgtttttattactggcccttggatttatttttgccatgtgtcattaatc 17439919  T
Q  125 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
    ||||||||||| ||||||||||| | |||||| |||||||| | | ||||||||    
T  17439918 catgcattggaaaggagtaaatggaggaatgtaaaatggagtaaatatgaactc 17439865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 17440604 - 17440746
Alignment:
Q  38 gatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggaga 137  Q
    ||||| ||||||||| || | |||| ||||| |||||||  ||||| | ||| || || ||| |||||||||||||||||||| |||||||||||||| |    
T  17440604 gatgatgagaggaataagttaaattggtctcaattttaacattttaatcttaacctttagatctatttttgccatgtgtcattaatccatgcattggaaa 17440703  T
Q  138 ggagtaaatgaaagaatgttaaatggagcatagatgaactcat 180  Q
    |||||||||| | |||||| |||||||||| |||| |||||||    
T  17440704 ggagtaaatggaggaatgtaaaatggagcaaagataaactcat 17440746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 20666898 - 20666758
Alignment:
Q  25 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 124  Q
    ||||||| | |||||||| ||||||||| ||||||| | | |||| |||||| |||||| ||| | || |||||||||| ||||||| || |||||||||    
T  20666898 tatcaacgaagaagatgatgagaggaattagatgaaatggcctctgttttaaccttttaatatcaacctttggatttatatttgccacgtatcatttatc 20666799  T
Q  125 catgcattggagaggagtaaatgaaagaatgttaaatggag 165  Q
    ||||||||||| ||||||| ||| | ||||| || ||||||    
T  20666798 catgcattggaaaggagtagatggaggaatgctatatggag 20666758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 20667461 - 20667532
Alignment:
Q  94 ttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggag 165  Q
    |||||||||| |||||||  |||||||||||||||||||||| ||||||||||| | ||||| |||||||||    
T  20667461 ttggatttatatttgccacatgtcatttatccatgcattggaaaggagtaaatggaggaatgctaaatggag 20667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 30430342 - 30430494
Alignment:
Q  25 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 124  Q
    ||||||| | |||||||| ||||||||| |  |||| | | || |||||||| |||||| | ||| ||||| |||||||||||||||  |||||||||||    
T  30430342 tatcaacgaagaagatgatgagaggaatta--tgaaatggcctatattttaaacttttaatcttaaccctttgatttatttttgccacatgtcatttatc 30430439  T
Q  125 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactca 179  Q
     |||||||||| ||||||||||| | ||||  ||||||||||| |||||||||||    
T  30430440 tatgcattggaaaggagtaaatggaggaatactaaatggagcaaagatgaactca 30430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 10468823 - 10468749
Alignment:
Q  31 caatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttattt 105  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10468823 caatgaagatgatgagaggaatcaactgaattagtctctattttaagattttattattagcccttggatttattt 10468749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 30429470 - 30429387
Alignment:
Q  97 gatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactcat 180  Q
    ||||||| |||||||  |||||||||||||||||||||| ||||| ||||| | ||||  ||||||||||| ||||||||||||    
T  30429470 gatttatctttgccacatgtcatttatccatgcattggaaaggagcaaatggaggaatactaaatggagcaaagatgaactcat 30429387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 36139778 - 36139704
Alignment:
Q  91 cccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggag 165  Q
    ||||||||||| |||||||||  ||||| ||||| ||| |||||| ||||||||||  | ||||| |||||||||    
T  36139778 cccttggatttctttttgccacatgtcacttatctatgtattggacaggagtaaattgaggaatggtaaatggag 36139704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 36140637 - 36140748
Alignment:
Q  35 gaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattgg 134  Q
    |||||||| |||| |||| ||||||||| ||| | |||||||  ||||| | | | ||||||||||| ||||||| |  ||||  ||||||||| |||||    
T  36140637 gaagatgatgagaagaataagatgaattggtccc-attttaacattttaatctcaacccttggatttctttttgcaacatgtcgcttatccatgtattgg 36140735  T
Q  135 agaggagtaaatg 147  Q
    | |||||||||||    
T  36140736 aaaggagtaaatg 36140748  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 27340743 - 27340824
Alignment:
Q  97 gatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
    ||||||| |||||||  |||||||||||||||||||||| ||||||||||| | ||||  ||||||||||| ||||||||||    
T  27340743 gatttatctttgccacatgtcatttatccatgcattggaaaggagtaaatggaggaatactaaatggagcaaagatgaactc 27340824  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 17869758 - 17869644
Alignment:
Q  64 gtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatgg 163  Q
    |||||||| |||| | |||| | | ||||||||||||||||||| |||||||||||  ||| |||||||| | ||||||||||| |  || | |||||||    
T  17869758 gtctctatgttaaccatttaatttcagcccttggatttatttttaccatgtgtcatgcatctatgcattgaaaaggagtaaatggagcaaggctaaatgg 17869659  T
Q  164 agcatagatgaactc 178  Q
    |||| ||||||||||    
T  17869658 agcaaagatgaactc 17869644  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 27339803 - 27339716
Alignment:
Q  91 cccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 178  Q
    ||||| ||||||||||| |||  | |||| |||| |||||||||| | ||||||||| ||||||  ||||||||||| ||||||||||    
T  27339803 ccctttgatttatttttaccacatatcatctatctatgcattggaaatgagtaaatggaagaatactaaatggagcaaagatgaactc 27339716  T

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