View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_52 (Length: 267)
Name: NF4005_low_52
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 53452125 - 53452360
Alignment:
| Q |
13 |
aaaatgaataaagagtgaattgagttacctagagcgaaataagtgacgaaattggtttcaacggcagaaggaggaatgaggggaagattctcaacatcag |
112 |
Q |
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| T |
53452125 |
aaaatgaataaagagtgaattgagttacctagagcgaaataagtgacgaaattggtttcaatggcagaaggaggaatgaggggaaaattctcaacatcag |
53452224 |
T |
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| Q |
113 |
ggagtagaagcttctctaaatcatcttcttctgaactattcgattcgtctatgatctggtcattttctacggttgacatcgtattatttgtttgatttta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53452225 |
ggagtagaagcttctctaaatcatcttcttctgaactattcgattcgtctatgatctggtcattttctacggttgacatcgtattatttgtttgatttta |
53452324 |
T |
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| Q |
213 |
aatgagaaacaaactgcaaaagttcacctctttcagc |
249 |
Q |
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| T |
53452325 |
aatgagaaacaaactgc-aaagttcacctctttcagc |
53452360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 31053712 - 31053581
Alignment:
| Q |
13 |
aaaatgaataaagagtgaattgagttacctagagcgaaataagtgacgaaattggtttcaacggcagaaggaggaatgaggggaagattctcaacatcag |
112 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31053712 |
aaaatgaataatgagtgaattgagttacctagagcgaaataagtgacgaaattggtttcaacggcagaaggaggaatgaggggaagattctgaacatcag |
31053613 |
T |
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| Q |
113 |
ggagtagaagcttctctaaatcatcttcttct |
144 |
Q |
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| T |
31053612 |
ggagtagaagcttctctaaatcgtcctcttct |
31053581 |
T |
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