View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4005_low_53 (Length: 264)
Name: NF4005_low_53
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_53 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 34827883 - 34827634
Alignment:
| Q |
18 |
gagccacttggtgttatatgggttgacacnnnnnnnncttctcataccattcatatactaccaa----gtgactgatgtatcaccactccttttataatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
34827883 |
gagccacttggtgttatatgggttgacacttttttttcttctcataccattcatatactaccaaccaagtgactgatgtatcaccactccttttataaat |
34827784 |
T |
|
| Q |
114 |
tttaacttaacatgttaattttatcaaaaaataaacatgtgttgattggactcctctattttttgtgtgtgtaagtatttatgtgtctaagtacttacta |
213 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34827783 |
tttaacttaacatgtcaattt-atcaaaaaataaacatgtgttgattggactcctctattttttgtgtgtgtaagtatttatgtgtctaagtacttacta |
34827685 |
T |
|
| Q |
214 |
taagcaatgccttaagagcttatttctctaatttaaatgcgccaaccatga |
264 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34827684 |
taagcaatgccttaagtgcttatttctctaatttaaatgcgccaaccatga |
34827634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University