View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_57 (Length: 255)
Name: NF4005_low_57
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 35622257 - 35622486
Alignment:
| Q |
11 |
caaaggtaaagagatttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35622257 |
caaaggtaaagagatttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaaaatactcaacaattccaa |
35622356 |
T |
|
| Q |
111 |
ctcggaatcgccatttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622357 |
ctcggaatcgccatttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcaga |
35622456 |
T |
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| Q |
211 |
gtaaatccaaacattggtggataagattat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
35622457 |
gtaaatccaaacattggtggataagattat |
35622486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 34263339 - 34263568
Alignment:
| Q |
11 |
caaaggtaaagagatttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaa |
110 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||| |||||||| |
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| T |
34263339 |
caaaggtagagagatttccaagaagagtttcggttaatataagcgaaaccaggtaaacacatgtatcccattgtgaaagtaaaatactcaagaattccaa |
34263438 |
T |
|
| Q |
111 |
ctcggaatcgccatttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcaga |
210 |
Q |
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| | |||||||||| ||| ||||||||||||||||||||||||||||||| || | || || || ||||||||||| |||||||||||||||||||| |
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| T |
34263439 |
ccctaaatcgccattctgcgttaactttctcggtaagcaaaacaagaacacacgtggcaatggatgaacgccagaaaccgatcaagaatttcaaggcaga |
34263538 |
T |
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| Q |
211 |
gtaaatccaaacattggtggataagattat |
240 |
Q |
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||||||||||||||| ||||| |||||||| |
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| T |
34263539 |
gtaaatccaaacattagtggaaaagattat |
34263568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 14543459 - 14543230
Alignment:
| Q |
11 |
caaaggtaaagagatttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaa |
110 |
Q |
| |
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|||| ||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14543459 |
caaatgtaaagacttttccaagaagagtttcggttaatataagcaaaaccaggtaaagacatgtaccccattgtgaaagtaaaatactcaacaattccaa |
14543360 |
T |
|
| Q |
111 |
ctcggaatcgccatttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcaga |
210 |
Q |
| |
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||| |||||||||| || ||||||||||| || ||||||||||||||||||||||| || || || ||||||||||||||||||||||||| || || |
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| T |
14543359 |
ctctaaatcgccattcagcactaactttctctgttagcaaaacaagaacacatgtacctatagacgaacgccagaaaccaatcaagaatttcattgctga |
14543260 |
T |
|
| Q |
211 |
gtaaatccaaacattggtggataagattat |
240 |
Q |
| |
|
|||||||||||||||||| || |||||||| |
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|
| T |
14543259 |
gtaaatccaaacattggttgaaaagattat |
14543230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 14580128 - 14580357
Alignment:
| Q |
11 |
caaaggtaaagagatttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaa |
110 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14580128 |
caaatgtaaagacttttccaagaagagtttcggttaatataagcaaaaccaggtaaagacatgtaccccattgtgaaagtaaaatactcaacaattccaa |
14580227 |
T |
|
| Q |
111 |
ctcggaatcgccatttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcaga |
210 |
Q |
| |
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||| |||||||||| || ||||||||||| || ||||||||||||||||||||||| || || || ||||||||||||||||||||||||| || || |
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| T |
14580228 |
ctctaaatcgccattcagcactaactttctcagttagcaaaacaagaacacatgtaccaatagacgaacgccagaaaccaatcaagaatttcatagcgga |
14580327 |
T |
|
| Q |
211 |
gtaaatccaaacattggtggataagattat |
240 |
Q |
| |
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|||||||||||||||||| || |||||||| |
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| T |
14580328 |
gtaaatccaaacattggttgaaaagattat |
14580357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 10378357 - 10378260
Alignment:
| Q |
131 |
ctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacattggt |
228 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || || ||||| || ||| | || |||||||||||||| || |||| ||||||||||||||||| |
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| T |
10378357 |
ctaactttctcggttagcaaaacaagaacacaagttccaatcgacgaacgcaaaaacccaatcaagaatttaaaaacagaataaatccaaacattggt |
10378260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 228
Target Start/End: Complemental strand, 10404428 - 10404249
Alignment:
| Q |
49 |
ataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaactcggaatcgccatttggcgctaactttctcggtaagc |
148 |
Q |
| |
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|||||| | ||||||||| ||||||||||| | |||||| || ||| ||||| |||||||| ||| | ||| | || |||||||| || || | | |
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| T |
10404428 |
ataagctacaccgggtaatgacatgtaccctaatgtgaagcaaaaatattcaacgattccaaccgtgaacctccactcggtactaactttttccgttaac |
10404329 |
T |
|
| Q |
149 |
aaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacattggt |
228 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| || || || | |||||| || || |||||||||||||||||||| |
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| T |
10404328 |
aaaacaagaacacatgtaccgatagacgaacgccaaaatccgataaggaatttgaaagccgagtaaatccaaacattggt |
10404249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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