View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4005_low_6 (Length: 651)

Name: NF4005_low_6
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4005_low_6
NF4005_low_6
[»] chr2 (9 HSPs)
chr2 (18-636)||(21434097-21434716)
chr2 (18-239)||(26990328-26990549)
chr2 (18-238)||(27029211-27029431)
chr2 (18-211)||(27074383-27074576)
chr2 (201-368)||(27153196-27153358)
chr2 (283-366)||(26990180-26990263)
chr2 (18-85)||(27153403-27153469)
chr2 (368-400)||(26990122-26990154)
chr2 (335-371)||(27029087-27029123)
[»] chr6 (3 HSPs)
chr6 (18-239)||(34692585-34692806)
chr6 (283-366)||(34692242-34692325)
chr6 (368-400)||(34692184-34692216)
[»] chr4 (1 HSPs)
chr4 (89-249)||(50172191-50172351)


Alignment Details
Target: chr2 (Bit Score: 576; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Complemental strand, 21434716 - 21434097
Alignment:
Q  18 tttatcagcaacatatgagacatacatcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434716 tttatcagcaacatatgagacatacatcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatc 21434617  T
Q  118 aatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21434616 aatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaagtggtatctctccatcaatatcagattatctttatgc 21434517  T
Q  218 atccgccatacctacaacatttgttagcaacattttcatacattttctataaaa-gtggcgacttctgaatcattaagtggatatatatttagcacattt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21434516 atccgccatacctacaacatttgttagcaacattttcatacattttctataaaaagtggcgacttctgaatcattaagtggatatatatttagcacattt 21434417  T
Q  317 gaaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataatcca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434416 gaaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataatcca 21434317  T
Q  417 agatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcatgttagaccaaaagagcgattttagaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21434316 agatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcattttagaccaaaagagcgattttagaat 21434217  T
Q  517 gagatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcgtatcatttggttgtttaannnnnnnnaataaagta 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||||||    
T  21434216 gagatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcatatcatttggttgtttaattttttttaataaagta 21434117  T
Q  617 gttttttcccaagtttattt 636  Q
    ||||||||||||||||||||    
T  21434116 gttttttcccaagtttattt 21434097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 26990549 - 26990328
Alignment:
Q  18 tttatcagcaacatatgagacatacatcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatc 117  Q
    ||||||| |||| |||  |||||||||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||| ||||||| |||||    
T  26990549 tttatcaacaacttatctgacatacatcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcattttcattctcatc 26990450  T
Q  118 aatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgc 217  Q
    ||||| |||  |||||||||||||||| | |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | |    
T  26990449 aatattcaatgcagcaagtgatttgcattggaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtac 26990350  T
Q  218 atccgccatacctacaacattt 239  Q
     || ||||||||||||||||||    
T  26990349 ttcggccatacctacaacattt 26990328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 27029431 - 27029211
Alignment:
Q  18 tttatcagcaacatatgagacatacatcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatc 117  Q
    ||||||| |||| |||  |||||||||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||||| |||||    
T  27029431 tttatcaacaacttatctgacatacatcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatc 27029332  T
Q  118 aatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgc 217  Q
    ||||| |||  |||||||||||||||| | |||| | || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | |    
T  27029331 aatattcaatgcagcaagtgatttgcattggaggccaaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtac 27029232  T
Q  218 atccgccatacctacaacatt 238  Q
     || |||||||||||||||||    
T  27029231 ttcggccatacctacaacatt 27029211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 27074383 - 27074576
Alignment:
Q  18 tttatcagcaacatatgagacatacatcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatc 117  Q
    ||||||| |||| ||| ||||||||||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||||| |||||    
T  27074383 tttatcaacaacttatcagacatacatcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatc 27074482  T
Q  118 aatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatct 211  Q
    |||||||||  || ||||||||||||  | |||| | || ||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  27074483 aatatgcaatgcaacaagtgatttgcgttggaggccaaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatct 27074576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 201 - 368
Target Start/End: Complemental strand, 27153358 - 27153196
Alignment:
Q  201 tcagattatctttatgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaag-tggcgacttctgaatca----ttaagt 295  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||          ||||||| | | |||||||||||||    ||||||    
T  27153358 tcagattatctttgtgcttctgccatacctacaacatttgttagcaacattttca----------ataaaaggtagtgacttctgaatcattaattaagt 27153269  T
Q  296 ggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcatta 368  Q
    ||||| || ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  27153268 ggatagatctttagcacatttgaaactatgagctgggtatttagagaataaactttagaggaatggttcatta 27153196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 26990263 - 26990180
Alignment:
Q  283 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 366  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  26990263 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 26990180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 27153469 - 27153403
Alignment:
Q  18 tttatcagcaacatatgagacatacatcgaagaatttggagttgatatgtctaagcactttgagaatt 85  Q
    ||||||||| || ||||||| |||||||||||||||| ||||||||  |||| |||||||| ||||||    
T  27153469 tttatcagcgacgtatgagatatacatcgaagaattt-gagttgatcagtcttagcactttcagaatt 27153403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 26990154 - 26990122
Alignment:
Q  368 aaaacaccaagtttaccaataatcaggaaaaac 400  Q
    ||||||||||||| |||||||||||||||||||    
T  26990154 aaaacaccaagttaaccaataatcaggaaaaac 26990122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 27029123 - 27029087
Alignment:
Q  335 tatagagaataaactttagaggaatggttcattaaaa 371  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  27029123 tatagagaataaaatttagaggaatgattcattaaaa 27029087  T

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Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 34692806 - 34692585
Alignment:
Q  18 tttatcagcaacatatgagacatacatcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatc 117  Q
    ||||||| |||| |||  |||||||||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||| ||||||| |||||    
T  34692806 tttatcaacaacttatctgacatacatcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcaatttcattctcatc 34692707  T
Q  118 aatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgc 217  Q
    ||||| |||  |||||||||||||||| | |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | |    
T  34692706 aatattcaatgcagcaagtgatttgcattggaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtac 34692607  T
Q  218 atccgccatacctacaacattt 239  Q
     || ||||||||||||||||||    
T  34692606 ttcggccatacctacaacattt 34692585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 34692325 - 34692242
Alignment:
Q  283 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 366  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  34692325 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 34692242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 34692216 - 34692184
Alignment:
Q  368 aaaacaccaagtttaccaataatcaggaaaaac 400  Q
    ||||||||||||| |||||||||||||||||||    
T  34692216 aaaacaccaagttaaccaataatcaggaaaaac 34692184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 50172191 - 50172351
Alignment:
Q  89 gcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatc 188  Q
    ||||| |||||||| ||||||||||||||  | | |   |||||||| ||||||||||||| | | || | | | || ||||||   ||||  |||||||    
T  50172191 gcaagtgctccatctgtttcattttcatcgctcttcgtttcagcaagagatttgcaattgaagccaaactgccgacagcttgaagcaaaaaaatggtatc 50172290  T
Q  189 tctccatcaatatcagattatctttatgcatccgccatacctacaacatttgttagcaaca 249  Q
    | ||||||||||||||||| | ||||||| ||  |||| |||||||||||| |||||||||    
T  50172291 tttccatcaatatcagattgtttttatgcttcatccatgcctacaacattttttagcaaca 50172351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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