View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_63 (Length: 244)
Name: NF4005_low_63
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 21476048 - 21475909
Alignment:
| Q |
85 |
aaaggattttaaactaggaatcgaaaaagaaaatgaggnnnnnnngtacaaattatagaagaagtctattccttaactataacatcgattcccaagcccc |
184 |
Q |
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| T |
21476048 |
aaaggattttaaactaggaatcgaaaaagaaaatgaggtttttttgtacaaattatagaagaagtctattccttaactataacatcgattcccaagcccc |
21475949 |
T |
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| Q |
185 |
catatattgcaatattggtaggaaattttgatgtttgcat |
224 |
Q |
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| T |
21475948 |
catatattgcaatattggtaggaaattttgatgtttgcat |
21475909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 21476264 - 21476181
Alignment:
| Q |
18 |
taatttatttgactatttgaatacctgatttgtttgaaattctcaaatgaaaactgatgaaggggttaaaggattttaaactag |
101 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21476264 |
taatttatttgactatttgaatacctgatttttttgaaattctcaaatgaaaactgatgaaggggttaaaggattttaaactag |
21476181 |
T |
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