View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_65 (Length: 240)
Name: NF4005_low_65
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 42305411 - 42305615
Alignment:
| Q |
13 |
gagacctgtttaataaaatctaagagaaaactagtaaagtcgttagcggtacatagtaaattacaaacaatgttgtctaactcaattaattctcaagact |
112 |
Q |
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| T |
42305411 |
gagacccgtttaatgaaatctaagagaaaactagtaaagtcgttagcggtatatagtaaattacaaacaatgttgtctaactcaattaattctcaacac- |
42305509 |
T |
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| Q |
113 |
tcattcatgacttttgggcacacgaaaaaagtgtgaatatgtgttttagcaagctgttcacaatgcacacaaatatcgttaattaagagatcattctcta |
212 |
Q |
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| T |
42305510 |
---ttcatgacttttgggcacacgaaaaaagtgtgaatatgtgtttcaacaagctgttcacaatgcacacaggtatcgttaattaggagaccattcttta |
42305606 |
T |
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| Q |
213 |
acaaacggg |
221 |
Q |
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| T |
42305607 |
acaaacggg |
42305615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 31403185 - 31403080
Alignment:
| Q |
116 |
ttcatgacttttgggcacacgaaaaaagtgtgaatatgtgttttagcaagctgttcacaatgcacacaaatatcgttaattaagagatcattctctaaca |
215 |
Q |
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| T |
31403185 |
ttcatggcttttgggcacacaaaaaaagtgtggatgtgtgtttcatccagttgttcacaatgcacacagttatcgttgattgggagacccttctctgaca |
31403086 |
T |
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| Q |
216 |
aacggg |
221 |
Q |
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| |||| |
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| T |
31403085 |
agcggg |
31403080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 3884628 - 3884803
Alignment:
| Q |
34 |
aagagaaaactagtaaagtcgttagcggtacatagtaaattacaaacaatgttgtctaactcaattaattctcaagacttcattcatgacttttgggcac |
133 |
Q |
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| T |
3884628 |
aagagaagactagtaaagttgttagcagtacacaataaattacagacattgttgtc-----caattaattcccaacacttcatggttg----tagggcac |
3884718 |
T |
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| Q |
134 |
acgaaaa--aagtgtgaatatgtgttttagcaagctgttcacaatgcacacaaatatcgttaattaagagatcattctctaacaa |
216 |
Q |
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| T |
3884719 |
actaaaaaaaagtgtgaatgtgtgttttagccaattgttcacaatgcacacaggtattgtcagttgagagacccttctctaacaa |
3884803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 25898886 - 25898728
Alignment:
| Q |
28 |
aaatctaagagaaaactagtaaagtcgttagcggtacatagtaaattacaaacaatgttgtctaactcaattaattctcaagacttcattcatgactttt |
127 |
Q |
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| T |
25898886 |
aaatcaaagagaagactagtaaagtcgttagcggta-acaacaaatcacggacagtgttgtccaacccaattaattcccaacactttat----ggctttt |
25898792 |
T |
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| Q |
128 |
gggcacacgaaaaaagtgtgaatatgtgttttagcaagctgttcacaatgcacacaaatatcgtt |
192 |
Q |
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| T |
25898791 |
gggcacac-aaaaacgtgtggatgtgtgtttcagccagctgttcacaatgcacacaattatcgtt |
25898728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 3574933 - 3575017
Alignment:
| Q |
137 |
aaaaaagtgtgaatatgtgttttagcaagctgttcacaatgcacacaaatatcgttaattaagagatcattctctaacaaacggg |
221 |
Q |
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| T |
3574933 |
aaaaaattgtggatgtgtgttttagccagttgttcacaatgcacacagttatcattgattaggagacccttttctaacaagcggg |
3575017 |
T |
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