View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_67 (Length: 237)
Name: NF4005_low_67
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 45687180 - 45687386
Alignment:
| Q |
15 |
gagatataaatagagtaattaatgtagaacaaaaataattcaattaccagagnnnnnnnctaagatttacacaaattcacctgatctcctattttaaggg |
114 |
Q |
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| T |
45687180 |
gagatataaatagagtaattaatgtagaacaaaaataattcaattaccagagaaaaaaactaagatttacacaaattcacctgatctcctattttaaggg |
45687279 |
T |
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| Q |
115 |
gcagtacatcaccaacgacaatttcaaatatcgatatttttattgttctgccacctcttatggcctgtagcaagtttatgagtgcatgatcgatcagttc |
214 |
Q |
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| T |
45687280 |
gcagtacatcaccaacgacaatttcaaatatcgatatttttattgttctgccacctcttatggcctgtagcaagtttatgagtgcatgatcgatcagttc |
45687379 |
T |
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| Q |
215 |
aacttcc |
221 |
Q |
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||||||| |
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| T |
45687380 |
aacttcc |
45687386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 1438938 - 1438836
Alignment:
| Q |
86 |
caaattcacctgatctcctattttaaggggcagtacatcaccaacgacaatttcaaatatcgatatttttattgttctgccacctcttatggcctgtagc |
185 |
Q |
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|||| ||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| || ||||| || ||||| |||| ||| ||| |||||| | |
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| T |
1438938 |
caaactcacctgatctcctattttaaggggtataacatcaccaacaacaatatcaaatatggagattttaatcgttctcccacttctcatgacctgtaac |
1438839 |
T |
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| Q |
186 |
aag |
188 |
Q |
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||| |
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| T |
1438838 |
aag |
1438836 |
T |
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