View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_68 (Length: 236)
Name: NF4005_low_68
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 1677611 - 1677454
Alignment:
| Q |
1 |
cagcacaaaatccgtcatgctataatgccatggcggaactttgacaacattggttaggtccaacctatttaaatgttcttggttaagtccagcctaa-tt |
99 |
Q |
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| T |
1677611 |
cagcacaaaatccgtcatgctataatgccatggcggaaatttgacaacactggttaggtccaacctatttaaattttcttggttaagtccagcctaattt |
1677512 |
T |
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| Q |
100 |
atattttctccgggaatttccaacccaacnnnnnnncatacgctccttctatttgtta |
157 |
Q |
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| T |
1677511 |
atattttctccgggaattttcaacccaactttttttcatacactccttctatttgtta |
1677454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 1677197 - 1677132
Alignment:
| Q |
156 |
tataatctttatttcaaggcgtatttgataatgtagtatctcttggccgagattcaaacttgttat |
221 |
Q |
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| T |
1677197 |
tataatctttatttcaaggcgtatttgataatgtagtatctcttggccgagattcaaacttgttat |
1677132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10830800 - 10830853
Alignment:
| Q |
1 |
cagcacaaaatccgtcatgctataatgccatggcggaactttgacaacattggt |
54 |
Q |
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||||||||||||| | || |||||||||||||||||| |||||||||| |||| |
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| T |
10830800 |
cagcacaaaatccaccgtggtataatgccatggcggaaatttgacaacactggt |
10830853 |
T |
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