View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_7 (Length: 633)
Name: NF4005_low_7
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 69 - 613
Target Start/End: Original strand, 4191640 - 4192190
Alignment:
| Q |
69 |
aatttagcagtttggttcttctctcctctcggatgagttttgtcaccaagcacattagagaggtttatcactagagatagaaaacagtcactcattaaca |
168 |
Q |
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| T |
4191640 |
aatttagcagtttggttcttctctcctctcggatgagttttgtcaccaagcacattagagaggtttatcactagagagagaaaacagtcactcattaaca |
4191739 |
T |
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| Q |
169 |
tttacaataagcaattaaaaagaccatcttattctttagaataacaatgctaactgaatacccgaattaaaaattgttatcaagatgtcatcaaaatctt |
268 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | |
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| T |
4191740 |
tttacaa--agcaattaaaaagaccatcttattctttagaataacaatgctaactgaatatccgaattaaacattgttatcaagatgtcatcaaaatcgt |
4191837 |
T |
|
| Q |
269 |
agaaatgacatctactacgatctctcttgctatcagttaacttattcaatatccctctttttatgttcatccgttatcattaacttatttattatccact |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191838 |
agaaatgacatctactacgatctctcttgctatcagttaacttattcaatatccctctttttatgttcatccgttatcattaacttatttattatccact |
4191937 |
T |
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| Q |
369 |
ggttattatttcaaaataacac--------aagagagttgttgttctcacgtccattgtttcttttttggtcatttccatgtgtttgtatgaaacaatgg |
460 |
Q |
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| T |
4191938 |
ggttattatttcaaaataacacctttgaagaagagagttgttgttctcacctccattgtttcttttttggtcattttcatgtgtttgtaggaaacaatgg |
4192037 |
T |
|
| Q |
461 |
atgtgtcagcagcaattttctgaatgttacgcccaatgagttcaggcccagcatttttagtatttcaggcccaagcccaacaagtgttgaacggatagaa |
560 |
Q |
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| T |
4192038 |
atgtgtaaacagcaattttctgaatgttacgcccaatgagttcaggcccagcatttttagtatttcaggcccaagcccaacaagtgttgaacggatagaa |
4192137 |
T |
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| Q |
561 |
tcagataagagctgtttatgtaagtgcttcatcttcttccccacgttttcgct |
613 |
Q |
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| T |
4192138 |
tcagataagagctgtttatgtaagtgcttcatcttcttccccacgttttcgct |
4192190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4191582 - 4191614
Alignment:
| Q |
19 |
gtgattagtgtggaaaatgaaaaacatatcata |
51 |
Q |
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| T |
4191582 |
gtgattagtgtggaaaatgaaaaacatatcata |
4191614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 10818876 - 10818916
Alignment:
| Q |
424 |
tttttggtcatttccatgtgtttgtatgaaacaatggatgt |
464 |
Q |
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| T |
10818876 |
tttttggtcatttccatgtgtttttagaaaacaatggatgt |
10818916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 53860894 - 53860935
Alignment:
| Q |
423 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgt |
464 |
Q |
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| T |
53860894 |
ttttttggtcatttccatgtgtttctaggaaacaatggatgt |
53860935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 465
Target Start/End: Complemental strand, 53860827 - 53860785
Alignment:
| Q |
423 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgtg |
465 |
Q |
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| T |
53860827 |
ttttttggtcatttccatgtgtttctaggaaacattggatgtg |
53860785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 465
Target Start/End: Original strand, 54923065 - 54923107
Alignment:
| Q |
423 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgtg |
465 |
Q |
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| T |
54923065 |
ttttttggtcatttccatgtgtctctaggaaacaatggatgtg |
54923107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 24145211 - 24145252
Alignment:
| Q |
423 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgt |
464 |
Q |
| |
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| T |
24145211 |
ttttttggtcatttccatgtgtttctaagaaataatggatgt |
24145252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 41325012 - 41325052
Alignment:
| Q |
424 |
tttttggtcatttccatgtgtttgtatgaaacaatggatgt |
464 |
Q |
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| T |
41325012 |
tttttggttatttccatgtgtttctaagaaacaatggatgt |
41325052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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