View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4005_low_72 (Length: 227)
Name: NF4005_low_72
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_72 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 35384181 - 35383961
Alignment:
| Q |
3 |
ttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaatataacagagaataaattgaattaaataaaatcttgtataagctaatggtatt |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35384181 |
ttaacgtaccaaataaaaatagtacttaccaccaataaaaaaacaaatataacagagaataaattgaattaaataaaatcttgtataagctaatggtatt |
35384082 |
T |
|
| Q |
103 |
gcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaattgaactatttgaattaaatttgagccctatagatcaagaatcatcatggtcat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35384081 |
gcaacgtttatgaaacatagtacattttgcaaagggaacaaataaattgagctatttgaattaaatttgagccctatagatcaagaatcatcatggtcat |
35383982 |
T |
|
| Q |
203 |
taaacttaaaggcctttgcta |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35383981 |
taaacttaaaggcctttgcta |
35383961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 35388029 - 35387865
Alignment:
| Q |
1 |
acttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaatataacagagaataaattgaattaaataaaatcttgtataagctaatggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35388029 |
acttaaagtaccaaataaaaatagtacttaccaccaataaaaa---aaatataacagggaataaattgaattaaataaaatcttgtataagctaaaggta |
35387933 |
T |
|
| Q |
101 |
ttgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaattgaactatttgaattaaat |
168 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
35387932 |
ttgcaacatttctgaaacatagtacattttgcaaaggggacaaataaattgagctatttgaattaaat |
35387865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University