View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4005_low_74 (Length: 221)
Name: NF4005_low_74
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_74 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2510915 - 2510707
Alignment:
| Q |
1 |
gtgtttgaagaggtgaatgaaaggagtcatgttttctaccaaaaagtttaagnnnnnnntgaatcaatttgtgagttgttcgttaaattttggttcgcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510915 |
gtgtttgaagaggtgaatgaaaggagtcatgttttctaccaaaaagtttaagaaaaaaatgaatcaatttgtgagttgttcgttaaattttggttcgcta |
2510816 |
T |
|
| Q |
101 |
tacttaacatttctcatatcgcatttcatatttccaaaaggatgacactatttgaggttgta----tatactaagaaaccaatatacgtaagattgtcat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2510815 |
tacttaacatttctcatatcgcatttcatatttccaaaaggatgacactatttgaggttgtatatatatactaagaaaccaatatacgtaagattgtcat |
2510716 |
T |
|
| Q |
197 |
acactttct |
205 |
Q |
| |
|
||||||||| |
|
|
| T |
2510715 |
acactttct |
2510707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University