View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4006_high_2 (Length: 276)

Name: NF4006_high_2
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4006_high_2
NF4006_high_2
[»] chr7 (23 HSPs)
chr7 (102-263)||(6350353-6350514)
chr7 (88-233)||(33387490-33387637)
chr7 (96-226)||(7003524-7003653)
chr7 (96-226)||(7049395-7049524)
chr7 (157-233)||(13072043-13072119)
chr7 (137-233)||(21420055-21420151)
chr7 (114-233)||(32198872-32198991)
chr7 (100-164)||(36659070-36659134)
chr7 (97-173)||(44832729-44832805)
chr7 (97-145)||(49010640-49010688)
chr7 (113-180)||(23581250-23581317)
chr7 (98-180)||(23090231-23090313)
chr7 (97-179)||(28836988-28837070)
chr7 (125-233)||(8722525-8722633)
chr7 (96-155)||(8866941-8867000)
chr7 (106-180)||(31251965-31252039)
chr7 (144-190)||(48614137-48614183)
chr7 (131-180)||(553569-553618)
chr7 (158-235)||(8867640-8867717)
chr7 (97-178)||(33386831-33386911)
chr7 (158-235)||(33685745-33685822)
chr7 (130-226)||(32073529-32073625)
chr7 (96-144)||(33686461-33686509)
[»] chr5 (12 HSPs)
chr5 (96-233)||(23034862-23034998)
chr5 (96-233)||(30297107-30297242)
chr5 (96-164)||(15959146-15959214)
chr5 (99-174)||(8788726-8788801)
chr5 (114-172)||(20368293-20368351)
chr5 (97-233)||(8788018-8788156)
chr5 (96-155)||(12278065-12278124)
chr5 (113-172)||(20362932-20362991)
chr5 (96-164)||(10036806-10036873)
chr5 (96-164)||(26282518-26282585)
chr5 (96-164)||(36292821-36292888)
chr5 (96-164)||(39435596-39435663)
[»] chr4 (34 HSPs)
chr4 (113-235)||(20628655-20628777)
chr4 (97-233)||(20635493-20635629)
chr4 (111-233)||(2941386-2941508)
chr4 (111-233)||(3222232-3222354)
chr4 (113-211)||(5290651-5290749)
chr4 (112-174)||(33846480-33846542)
chr4 (96-226)||(26546456-26546588)
chr4 (96-164)||(13390648-13390716)
chr4 (130-226)||(31854155-31854250)
chr4 (96-155)||(28876524-28876583)
chr4 (130-180)||(13502487-13502537)
chr4 (96-233)||(9415797-9415932)
chr4 (96-164)||(34406484-34406551)
chr4 (96-164)||(44157522-44157590)
chr4 (158-233)||(3292805-3292880)
chr4 (96-155)||(30215956-30216015)
chr4 (96-155)||(33135654-33135713)
chr4 (94-153)||(56226192-56226251)
chr4 (97-155)||(42332983-42333041)
chr4 (96-150)||(50204302-50204356)
chr4 (137-233)||(15742705-15742799)
chr4 (140-233)||(29094332-29094425)
chr4 (158-235)||(42333685-42333762)
chr4 (184-233)||(56226267-56226316)
chr4 (96-164)||(1818554-1818621)
chr4 (161-233)||(9070467-9070538)
chr4 (96-164)||(13013088-13013155)
chr4 (96-164)||(25931609-25931676)
chr4 (96-164)||(26438479-26438546)
chr4 (96-164)||(26449622-26449690)
chr4 (96-164)||(36381549-36381616)
chr4 (96-164)||(43356804-43356871)
chr4 (96-164)||(47501673-47501740)
chr4 (157-233)||(48130161-48130237)
[»] chr8 (13 HSPs)
chr8 (97-233)||(33947257-33947393)
chr8 (96-164)||(3436131-3436199)
chr8 (96-226)||(9878118-9878247)
chr8 (114-173)||(15863523-15863582)
chr8 (96-145)||(32539693-32539742)
chr8 (140-233)||(33532980-33533073)
chr8 (97-233)||(33947628-33947763)
chr8 (97-196)||(40401350-40401449)
chr8 (96-233)||(29352261-29352395)
chr8 (96-164)||(24019591-24019658)
chr8 (96-164)||(28524098-28524165)
chr8 (137-221)||(33534788-33534872)
chr8 (96-164)||(39915414-39915481)
[»] chr3 (18 HSPs)
chr3 (114-178)||(19814987-19815052)
chr3 (87-179)||(10842491-10842583)
chr3 (106-233)||(5177104-5177231)
chr3 (98-229)||(38415649-38415783)
chr3 (96-154)||(5136191-5136249)
chr3 (97-155)||(11017480-11017538)
chr3 (122-211)||(8257706-8257795)
chr3 (118-233)||(219475-219590)
chr3 (99-233)||(16094283-16094418)
chr3 (130-180)||(218796-218846)
chr3 (98-164)||(27936081-27936147)
chr3 (96-145)||(29564382-29564431)
chr3 (114-155)||(35938141-35938182)
chr3 (100-180)||(485159-485239)
chr3 (96-164)||(19391046-19391113)
chr3 (96-164)||(22967644-22967711)
chr3 (96-164)||(34083322-34083389)
chr3 (96-164)||(39772690-39772757)
[»] chr2 (19 HSPs)
chr2 (113-233)||(21556283-21556403)
chr2 (115-198)||(18829074-18829157)
chr2 (97-180)||(37621905-37621988)
chr2 (96-202)||(15441489-15441595)
chr2 (131-233)||(18829830-18829932)
chr2 (88-233)||(17373669-17373814)
chr2 (96-156)||(7071742-7071802)
chr2 (96-164)||(17444236-17444303)
chr2 (96-164)||(26161903-26161970)
chr2 (158-229)||(26238130-26238201)
chr2 (114-173)||(26591296-26591355)
chr2 (96-138)||(12756065-12756107)
chr2 (96-233)||(15512385-15512522)
chr2 (97-183)||(30325429-30325521)
chr2 (130-203)||(40654140-40654213)
chr2 (96-164)||(771632-771700)
chr2 (96-164)||(6403004-6403071)
chr2 (96-164)||(18982443-18982510)
chr2 (96-164)||(41250833-41250900)
[»] chr1 (9 HSPs)
chr1 (88-212)||(17458081-17458204)
chr1 (96-164)||(17446191-17446259)
chr1 (96-164)||(41971457-41971525)
chr1 (97-164)||(15209490-15209557)
chr1 (98-164)||(3829883-3829949)
chr1 (114-233)||(17745041-17745162)
chr1 (117-232)||(9901855-9901968)
chr1 (111-233)||(3829166-3829291)
chr1 (186-232)||(33658895-33658941)
[»] scaffold0134 (1 HSPs)
scaffold0134 (106-233)||(18213-18340)
[»] chr6 (5 HSPs)
chr6 (87-202)||(16793782-16793897)
chr6 (98-233)||(23217804-23217939)
chr6 (133-211)||(28932958-28933036)
chr6 (158-233)||(28996913-28996988)
chr6 (96-164)||(399517-399584)
[»] scaffold0154 (1 HSPs)
scaffold0154 (96-164)||(32113-32181)
[»] scaffold0002 (1 HSPs)
scaffold0002 (96-164)||(479657-479724)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 263
Target Start/End: Complemental strand, 6350514 - 6350353
Alignment:
Q  102 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350514 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 6350415  T
Q  202 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350414 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttc 6350353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 33387490 - 33387637
Alignment:
Q  88 tctagttcgcttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagag 185  Q
    ||||| ||||| |||||||| || | ||||||| ||||||| ||||   | || |||||||||||||| | ||| ||||||||||||| |||||| ||      
T  33387490 tctaggtcgctcttttggacgttgcatatattaaagggtcaaaaatgggaaaaaaatctcaaattacagggttataatatgtgttttttattttatagga 33387589  T
Q  186 tcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||| ||||||| ||||||||| |  ||||||||  ||||||||    
T  33387590 tcattgtttagacttcatgtatattacaaggtcaattttgacaattaa 33387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 7003524 - 7003653
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 194  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7003524 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7003621  T
Q  195 agacttcgtgtatattatagagtcaatttcaa 226  Q
    |||||||  |||||||| |  |||||||||||    
T  7003622 agacttcacgtatattacatggtcaatttcaa 7003653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 7049395 - 7049524
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 194  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7049395 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7049492  T
Q  195 agacttcgtgtatattatagagtcaatttcaa 226  Q
    |||||||  |||||||| |  |||||||||||    
T  7049493 agacttcacgtatattacatggtcaatttcaa 7049524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 13072119 - 13072043
Alignment:
Q  157 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||||||||||||||||| ||||||  | |||||| |||||||||||  ||||||| || ||||||||||| ||||||    
T  13072119 ttagaatatgtgttttttattttacggggtcatttttcagacttcgcatatattacagggtcaatttcaataattaa 13072043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 21420151 - 21420055
Alignment:
Q  137 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||| |||||||||| | ||||||| | |||||||  ||||| ||| ||||| ||||||||||  |||||||| |  ||||||||||||||||||    
T  21420151 aagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatattacaaggtcaatttcaacaattaa 21420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 32198991 - 32198872
Alignment:
Q  114 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagtcattgttcagacttcgtgtatattat 212  Q
    ||||||| |||| || |||||| ||||||||||||||| | | |||||||||||||||||| ||||| |||| ||||| ||||||||  | ||||||||     
T  32198991 tatattagagggccaaaaataagaagaatctcaaattatagggttagaatatgtgtttttatttttacaaga-tcatttttcagactatgcgtatattac 32198893  T
Q  213 agagtcaatttcaacaattaa 233  Q
    |  |||||||| || ||||||    
T  32198892 aaggtcaatttaaataattaa 32198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 36659070 - 36659134
Alignment:
Q  100 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||  ||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||    
T  36659070 ttttggacttcgcgtatattacagggttataaataataaaaatctcaaattacatggtcagaata 36659134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 44832729 - 44832805
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 173  Q
    ||||||||||||| |  ||  ||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||    
T  44832729 cttttttggacttcaactaatttacagggtcaaaaataataagaatctcaaattacagggttaaaatatgtgttttt 44832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 49010640 - 49010688
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctc 145  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  49010640 cttttttggacttcacgtatattacagggtcataaataataaaaatctc 49010688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 23581317 - 23581250
Alignment:
Q  113 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    |||||||||||||| | || ||| |||| |||||||||||| | ||||||||||| ||||||||||||    
T  23581317 gtatattatagggttaaaactaaaaagattctcaaattacagggttagaatatgtatttttaatttta 23581250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 23090231 - 23090313
Alignment:
Q  98 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    ||||||||||||||  ||||||| ||||||  ||||||||| ||| | |||||||| | ||| ||||||||||||| ||||||    
T  23090231 ttttttggactttaactatattaaagggtcgaaaataataaaaatattaaattacaagattataatatgtgttttttatttta 23090313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 28837070 - 28836988
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 179  Q
    ||||| ||||||| || ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| || ||||||| ||||    
T  28837070 cttttctggacttcacatatattacagggtcataaataataagaatatcaaataacaaggttaaaatttgcgtttttattttt 28836988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 8722633 - 8722525
Alignment:
Q  125 gtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttc 224  Q
    ||||||||||||||||||||| ||||||| | | | ||||| ||||||| |||||| | |||||||  ||||||||    ||||||| || | |||||||    
T  8722633 gtcataaataataagaatctcgaattacagggtcataatatatgttttttattttacaaagtcatttatcagactttacatatattacagggacaatttc 8722534  T
Q  225 aacaattaa 233  Q
    || ||||||    
T  8722533 aataattaa 8722525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 8867000 - 8866941
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 155  Q
    |||||||||||||| |||||||||| | ||| ||||||||||| ||| || |||||||||    
T  8867000 gcttttttggacttcacgtatattacaaggttataaataataaaaatttcgaattacatg 8866941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 31252039 - 31251965
Alignment:
Q  106 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    ||||| ||||||||| | ||| | | ||||||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  31252039 actttgcgtatattacaaggttaaagataataagaatatcaaaatatatggttagaatatgtgttttttatttta 31251965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 48614137 - 48614183
Alignment:
Q  144 tcaaattacatgtttagaatatgtgtttttaattttaaagagtcatt 190  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  48614137 tcaaattacatatttaaaatatgtgtttttatttttacagagtcatt 48614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 553569 - 553618
Alignment:
Q  131 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||||||||    
T  553569 aataagaataatttcaaattacatgactagaatatgtgtttttaatttta 553618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 8867640 - 8867717
Alignment:
Q  158 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 235  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   ||||||||||| |||||||| |||||||||||    
T  8867640 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattatagggtcaatttgaacaattaatc 8867717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 33386911 - 33386831
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattt 178  Q
    ||||||||||||   | ||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||| ||||||| ||||    
T  33386911 cttttttggactacgcatatattagagggtca-aaacaaaaagaatctcaaattacatgattaaaatatatgttttttattt 33386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 33685822 - 33685745
Alignment:
Q  158 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 235  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||| || |||||||| |||||||||||    
T  33685822 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaatc 33685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 32073529 - 32073625
Alignment:
Q  130 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 226  Q
    |||||||||||||  ||||||||||| ||| |||||||| | || |||||| |   ||||| |||||||||||  ||||||| |  |||||||||||    
T  32073529 aaataataagaattgcaaattacatgattaaaatatgtgctatttattttacatgatcatttttcagacttcgcatatattacaaggtcaatttcaa 32073625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 33686461 - 33686509
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatct 144  Q
    ||||||| |||||| |||||||||| ||||| ||||||||||| |||||    
T  33686461 gctttttaggacttcacgtatattacagggttataaataataaaaatct 33686509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 23034862 - 23034998
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 195  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||||||||| | | ||||||| ||||| |||||| ||||||||| ||||    
T  23034862 gcttttttggacttcacgtatattatagggtcataaatagtaaaaatatcgaattacatggtcataatatgtattttt-attttacagagtcatttttca 23034960  T
Q  196 gacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||||||||||| ||  |||||||||| ||||||    
T  23034961 gacttcgtgtatattacaggatcaatttcaataattaa 23034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 30297242 - 30297107
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 195  Q
    ||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||| | |||||||||||| |||| |||| | |  |||||| || |    
T  30297242 gcttttttggactttacgtatatcacatgatcataaataataagaatctcgaattacagggttagaatatgtgatttttatttaacaacgtcatt-ttga 30297144  T
Q  196 gacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||| ||||||| |  ||||||||||| ||||||    
T  30297143 gacttcgtttatattaca-tgtcaatttcaataattaa 30297107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 15959214 - 15959146
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  15959214 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacatgttcagaata 15959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 8788726 - 8788801
Alignment:
Q  99 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 174  Q
    |||||||||||||  |||||||||| || | ||||||||||||||||||||||||||  || ||||||||||||||    
T  8788726 tttttggactttaactatattatagagtaaaaaataataagaatctcaaattacatggctaaaatatgtgttttta 8788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 20368351 - 20368293
Alignment:
Q  114 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 172  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||| ||||    
T  20368351 tatattatatggtcaaaaataagaagaatctcaaattacaagtttaaaatatgtctttt 20368293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 8788156 - 8788018
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttc 194  Q
    |||||||||||   |||||||||||||||||| |||||  | || ||||||||||||||   ||||||||| ||||||| |||||| || || ||| |||    
T  8788156 cttttttggaccacacgtatattatagggtcaaaaataagaaaaaaatctcaaattacaaagttagaatatttgttttttattttacagggttatttttc 8788057  T
Q  195 agacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||   |||  ||| ||| || |||||||| |||||||||    
T  8788056 aggtatcgcatattttacagtgtcaatttaaacaattaa 8788018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 12278124 - 12278065
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 155  Q
    |||||||||||||| | |||||||| ||||| ||||||||||| ||| || |||||||||    
T  12278124 gcttttttggacttcatgtatattacagggttataaataataaaaatttcgaattacatg 12278065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 20362991 - 20362932
Alignment:
Q  113 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 172  Q
    |||||||||| ||||| |||||| ||||||||||||||||| | ||| ||||||| ||||    
T  20362991 gtatattatatggtcaaaaataagaagaatctcaaattacaaggttaaaatatgtctttt 20362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 10036806 - 10036873
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  10036806 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 10036873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 26282585 - 26282518
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26282585 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26282518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 36292888 - 36292821
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36292888 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36292821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 39435596 - 39435663
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    |||||||||||||| |||||| ||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39435596 gcttttttggacttcacgtatcttacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39435663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 20628777 - 20628655
Alignment:
Q  113 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 212  Q
    |||||||| ||||| | ||||||||||||| |||||||||| | ||  ||||||||||||| |||||| | ||||||| ||||||||||  ||||||||     
T  20628777 gtatattacagggtaaaaaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatattac 20628678  T
Q  213 agagtcaatttcaacaattaatc 235  Q
    || ||||||||||||||| ||||    
T  20628677 agggtcaatttcaacaatcaatc 20628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 20635629 - 20635493
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 196  Q
    ||||||||||||| | ||| |||||||||| | ||||||| ||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| || ||    
T  20635629 cttttttggacttaatgtacattatagggtaaaaaataatgagaatatcaaattacaaggttaaaatatgtgttttttattttacaggttcatttttgag 20635530  T
Q  197 acttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    | ||| | ||||||  |  |||||||| |||||||||    
T  20635529 atttcatatatattgcaaggtcaatttaaacaattaa 20635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 2941386 - 2941508
Alignment:
Q  111 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 210  Q
    |||| ||||||||||||| |||||  |||||| ||||||||||   ||| |||||||||||||| ||||| || |||||| |||||||  ||  ||||||    
T  2941386 acgtgtattatagggtcaaaaatagaaagaatatcaaattacagagttaaaatatgtgtttttatttttacagggtcatttttcagaccacgcctatatt 2941485  T
Q  211 atagagtcaatttcaacaattaa 233  Q
    | |   |||||||||||||||||    
T  2941486 acaagatcaatttcaacaattaa 2941508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 3222232 - 3222354
Alignment:
Q  111 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 210  Q
    |||||||||||||||||| |||||| ||||||||||||| |||   ||||||||||| ||||| |||||| ||  | ||| |||| || | |||||| ||    
T  3222232 acgtatattatagggtcaaaaataagaagaatctcaaatgacagagttagaatatgtatttttcattttacaggattatttttcaaacattgtgtatttt 3222331  T
Q  211 atagagtcaatttcaacaattaa 233  Q
    |  | |||||||| |||||||||    
T  3222332 acggggtcaatttaaacaattaa 3222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 5290749 - 5290651
Alignment:
Q  113 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 211  Q
    |||||||||| ||| | |||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || || ||| || ||||||| ||| |||||    
T  5290749 gtatattatatggtaaaaaataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttcatgtgtatta 5290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 33846480 - 33846542
Alignment:
Q  112 cgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 174  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||    
T  33846480 cgtatattaaagggtcaaaaataagaagaatatcaaattacatggttataatatgtgttttta 33846542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 26546588 - 26546456
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatg--tgtttttaattttaaagagtcattgtt 193  Q
    |||||||||||||| |  ||||||| ||||||  ||||||||||||||||||||||||   ||||||| ||  | ||||| |||||| ||||| | | ||    
T  26546588 gcttttttggacttcaactatattacagggtccaaaataataagaatctcaaattacagagttagaatgtgttttttttttattttacagagttaatttt 26546489  T
Q  194 cagacttcgtgtatattatagagtcaatttcaa 226  Q
    |||||||||  ||||||| ||  ||||||||||    
T  26546488 cagacttcgcatatattacaggatcaatttcaa 26546456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 13390716 - 13390648
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  13390716 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 13390648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 31854155 - 31854250
Alignment:
Q  130 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 226  Q
    ||||||||||||| |||||||||| | ||| ||||| ||||||| |||||| || |||||| ||||||||||   ||||||| || |||||||||||    
T  31854155 aaataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttcacatatattacag-gtcaatttcaa 31854250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 28876583 - 28876524
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 155  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||||||||    
T  28876583 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatg 28876524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 13502487 - 13502537
Alignment:
Q  130 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  13502487 aaataagaagaatctcaaattatatgtttaaaatatatgtttttaatttta 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 9415797 - 9415932
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 195  Q
    |||||||||||||| |  |||| || ||||||| ||| ||| |||||||||||||||| | ||| |||||||||| || | ||||  | || ||| ||||    
T  9415797 gcttttttggacttcaactataatacagggtcaaaaagaatcagaatctcaaattacagggttataatatgtgttattta-tttagtgggt-atttttca 9415894  T
Q  196 gacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||  ||||||| || ||||||||||| ||||||    
T  9415895 gacttcgcatatattacagggtcaatttcaataattaa 9415932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 34406551 - 34406484
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||| ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34406551 gcttttttggactttgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34406484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 44157522 - 44157590
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||| |||| | ||||||    
T  44157522 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattgcatggtcagaata 44157590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 3292805 - 3292880
Alignment:
Q  158 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  3292805 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 3292880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 30216015 - 30215956
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 155  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  30216015 gcttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 30215956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 33135713 - 33135654
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 155  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| |||||||||    
T  33135713 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatg 33135654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 56226192 - 56226251
Alignment:
Q  94 tcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattaca 153  Q
    ||||||||||||||||  ||||||||||  ||||  ||||||||||||| ||||||||||    
T  56226192 tcgcttttttggacttctcgtatattatttggtctcaaataataagaatatcaaattaca 56226251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 42333041 - 42332983
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 155  Q
    |||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  42333041 cttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 42332983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 50204356 - 50204302
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 150  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  50204356 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 50204302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 15742705 - 15742799
Alignment:
Q  137 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||| |  |||| | ||||||||  | |||||||| ||| ||||||| |||||||||    
T  15742705 aagaatctcaaa--acagggttagaatatgtgtttttatttttacaaggtcagttttcagactatgcgtatattacagaatcaatttgaacaattaa 15742799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 29094425 - 29094332
Alignment:
Q  140 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||||||||| | ||||||||||| ||||| |||||| || || ||| ||||||| | | |||| ||| || |||| ||| |||||||||    
T  29094425 aatctcaaattacagggttagaatatgtattttttattttacagggttatttttcagacattgcgtattttacagggtcattttaaacaattaa 29094332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 42333685 - 42333762
Alignment:
Q  158 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 235  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   |||||||| ||||||||||| |||||||||||    
T  42333685 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattacagagtcaatttgaacaattaatc 42333762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 56226267 - 56226316
Alignment:
Q  184 agtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||||||| || ||||||||||||||||| | ||| |||||||||||||||    
T  56226267 agtcattttttagacttcgtgtatattacaaagttaatttcaacaattaa 56226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 1818554 - 1818621
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  1818554 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 1818621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 9070538 - 9070467
Alignment:
Q  161 aatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||||||||  |||||||| |||||| ||||||||||| |||||||| |  |||||||| |||| ||||    
T  9070538 aatatgtgtttttctttttaaag-gtcatttttcagacttcgcgtatattacatggtcaatttgaacagttaa 9070467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 13013088 - 13013155
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  13013088 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 13013155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 25931609 - 25931676
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  25931609 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 25931676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 26438546 - 26438479
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26438546 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26438479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 26449622 - 26449690
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||| ||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26449622 gcttttttgaacttcgcgtatattacaggattataaataataaaaatctcgaattacatggtcagaata 26449690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 36381616 - 36381549
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36381616 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 43356804 - 43356871
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  43356804 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 43356871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 47501673 - 47501740
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  47501673 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 47501740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 48130237 - 48130161
Alignment:
Q  157 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||||||||  |||||||| |||||||||    
T  48130237 ttagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatatggtcaatttgaacaattaa 48130161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 33947393 - 33947257
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 196  Q
    ||||||||||||| || ||||||||||||||| | |||  ||||||||||||||||| | ||| |||| ||| ||||| || || ||||||||| |||||    
T  33947393 cttttttggacttcacatatattatagggtcaaacatatgaagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcag 33947294  T
Q  197 acttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||||||  ||||||| |  |||||||| |||||||||    
T  33947293 acttcgcctatattacatggtcaatttgaacaattaa 33947257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 3436131 - 3436199
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||| |||||| ||||||||||||| ||||    
T  3436131 gcttttttggactttgcgtatattacaaggttataaataataaaaatctcgaattacatgtttaaaata 3436199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 9878118 - 9878247
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 194  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||  |||| |||||  ||| || |||| | |||    
T  9878118 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaatacatgttatttaa--ttacagggtcaattttc 9878215  T
Q  195 agacttcgtgtatattatagagtcaatttcaa 226  Q
    ||||||| ||||||||| |  |||||||||||    
T  9878216 agacttcatgtatattacatggtcaatttcaa 9878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 15863523 - 15863582
Alignment:
Q  114 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 173  Q
    ||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||| |||||    
T  15863523 tatattatagggtcaaaaataagaagtatctcaaattacaagtttggaatatgtattttt 15863582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 32539742 - 32539693
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctc 145  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  32539742 gcttttttggacttcacgtattttacagggtgataaataataagaatctc 32539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 33532980 - 33533073
Alignment:
Q  140 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||||||||| | ||| ||| | || ||||| ||||| | ||||||| || |||||||||||| |||||||  ||||||| |||||||||    
T  33532980 aatctcaaattacaaggttataatttatgattttatttttacatagtcattttttagacttcgtgtacattataggatcaatttgaacaattaa 33533073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 33947628 - 33947763
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 196  Q
    |||||||||||||  |||| |||| ||||||| |||||| | |||| |||||||||| | ||| ||||| |||||||| ||||| |  |||||| |||||    
T  33947628 cttttttggacttagcgtacattagagggtcaaaaataagatgaatttcaaattacagggttaaaatatatgtttttatttttacatggtcatt-ttcag 33947726  T
Q  197 acttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||||   |||||||| |  |||||||| || ||||||    
T  33947727 actttacgtatattacattgtcaatttgaataattaa 33947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 40401350 - 40401449
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 196  Q
    ||||||||||||   | ||||||||||||| | |||||| |||||| |||| ||||| | |||||||||| ||| || ||||| ||| |||||| |||||    
T  40401350 cttttttggactacgcatatattatagggttaaaaataagaagaatatcaatttacaagattagaatatgcgttatttattttcaagtgtcatttttcag 40401449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 29352261 - 29352395
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 195  Q
    ||||||||| |||| |  ||||||| ||| | | ||||||||| | |||||||||||| | |||| |||||||||||| ||||| | | |||||| ||||    
T  29352261 gcttttttgtacttcaactatattacaggataaaaaataataaaagtctcaaattacagggttaggatatgtgttttttatttt-acgggtcatttttca 29352359  T
Q  196 gacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||   ||  ||||||| |||||||||||||| ||||||    
T  29352360 ga--gcgcatatattacagagtcaatttcaataattaa 29352395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 24019658 - 24019591
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  24019658 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 24019591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 28524098 - 28524165
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  28524098 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 28524165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 33534788 - 33534872
Alignment:
Q  137 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaat 221  Q
    ||||||||||||||| |   ||| ||| |||  ||||| ||||| | ||||||| || |||||||||||||||||||| ||||||    
T  33534788 aagaatctcaaattataaagttacaatttgttattttatttttacatagtcattatttagacttcgtgtatattatagggtcaat 33534872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 39915414 - 39915481
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39915414 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 19814987 - 19815052
Alignment:
Q  114 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattt 178  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  19814987 tatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtggtttttaattt 19815052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 10842491 - 10842583
Alignment:
Q  87 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 179  Q
    |||||| |||| ||| ||||| | || ||||||| |||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||    
T  10842491 atctagatcgcctttctggacatcacatatattaaagggtcataaataggaagaatatcaaattacatggttagaatatgtgtttttattttt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 5177231 - 5177104
Alignment:
Q  106 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 205  Q
    |||| |||||||||| | ||| | |||| | || ||||||||||||||||  |  ||||||||||||| |||||| ||| ||||| |||||||||| |||    
T  5177231 acttcacgtatattaaatggtaaaaaattagaaaaatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttcatgt 5177132  T
Q  206 atattatagagtcaatttcaacaattaa 233  Q
     ||||| |  |||||||| |||||||||    
T  5177131 ttattacatggtcaatttgaacaattaa 5177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 38415649 - 38415783
Alignment:
Q  98 ttttttggactttacgtatattatagggtcataaa-taataagaatctcaaattacatgtttagaatatgtg--tttttaattttaaagagtcattgttc 194  Q
    |||||||||||   ||||||||||||||| | ||| ||| ||||||||||||||||| | ||| ||||||||  ||||| |||||| |  |||||| |||    
T  38415649 ttttttggactacgcgtatattatagggtaaaaaaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttc 38415748  T
Q  195 agacttcgtgtatattatagagtcaatttcaacaa 229  Q
    |||| || ||||||||| || |||||||| |||||    
T  38415749 agacatcatgtatattacagcgtcaatttgaacaa 38415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 5136191 - 5136249
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacat 154  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||    
T  5136191 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacat 5136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 11017538 - 11017480
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 155  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| || |||||||||    
T  11017538 cttttttggacttcacgtatattatagggttataaataataaaaatttcgaattacatg 11017480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 8257706 - 8257795
Alignment:
Q  122 agggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 211  Q
    |||||||||||||||||||||||  ||||||||| | | ||||||||||||| |||||| || |||||| || | |||||| | ||||||    
T  8257706 agggtcataaataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttttaaacttcgcgaatatta 8257795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 219475 - 219590
Alignment:
Q  118 ttatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagt 217  Q
    |||||| |||| |||||| |||||| ||||||| || | ||| ||||| | ||||| |||||| |  |||||| ||||||| ||  |||| ||| |||||    
T  219475 ttatagagtcaaaaataagaagaatttcaaattgcaaggttaaaatatctattttttattttacaatgtcatttttcagacatcacgtattttacagagt 219574  T
Q  218 caatttcaacaattaa 233  Q
    |||||| |||||||||    
T  219575 caatttaaacaattaa 219590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 16094418 - 16094283
Alignment:
Q  99 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattttaaagagtcattgttcaga 197  Q
    ||||||||||| |  ||||||| ||||  | |||| ||||| ||||||||||||| | ||| |||||||  ||||| |||||| || |||| | ||||||    
T  16094418 tttttggacttcaactatattacagggcaaaaaattataaggatctcaaattacagggttataatatgtatttttttattttacagggtcaattttcaga 16094319  T
Q  198 cttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||  |||||||  | ||||||||||| ||||||    
T  16094318 cttcgcatatattactgggtcaatttcaataattaa 16094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 218846 - 218796
Alignment:
Q  130 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    |||||||||||||| ||||||||| | ||| ||||||||||||| ||||||    
T  218846 aaataataagaatcccaaattacagggttataatatgtgttttttatttta 218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 27936081 - 27936147
Alignment:
Q  98 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||  ||||||||| ||||| |||||||||||  ||||||||| ||||| | ||||||    
T  27936081 ttttttggacttcgcgtatattacagggttataaataataaatatctcaaatcacatggtcagaata 27936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 29564431 - 29564382
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctc 145  Q
    |||||||||||||| |||||||| | | ||||||||||||||| ||||||    
T  29564431 gcttttttggacttcacgtatatgacatggtcataaataataataatctc 29564382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 35938141 - 35938182
Alignment:
Q  114 tatattatagggtcataaataataagaatctcaaattacatg 155  Q
    |||||||| |||||| ||||||||||||||| ||||||||||    
T  35938141 tatattatggggtcaaaaataataagaatcttaaattacatg 35938182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 485239 - 485159
Alignment:
Q  100 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    |||||||| | |||||||||| ||||| | |||||  |||||||||||||||||  | |||||||| ||| |||| |||||    
T  485239 ttttggacatcacgtatattagagggtaaaaaatagaaagaatctcaaattacagatgtagaatatatgtctttattttta 485159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 19391046 - 19391113
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  19391046 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 19391113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 22967711 - 22967644
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  22967711 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 22967644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 34083389 - 34083322
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34083389 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34083322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 39772690 - 39772757
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39772690 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39772757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 21556403 - 21556283
Alignment:
Q  113 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 212  Q
    |||||||||||||||| |||| | ||||||||||||||||||  ||| ||||||| | ||| |||||| |  |||||| ||||||| |||||||| |||     
T  21556403 gtatattatagggtcaaaaattagaagaatctcaaattacatagttataatatgtatattttattttacaaggtcatttttcagacatcgtgtattttaa 21556304  T
Q  213 agagtcaatttcaacaattaa 233  Q
    |  |||| ||| |||||||||    
T  21556303 atggtcagtttaaacaattaa 21556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 18829157 - 18829074
Alignment:
Q  115 atattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagac 198  Q
    |||||||||||||| ||||||||||||||||||||||   | ||||||||||| ||||| |||||| ||  ||||| |||||||    
T  18829157 atattatagggtcaaaaataataagaatctcaaattatgaggttagaatatgtattttttattttacaggatcatttttcagac 18829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 37621905 - 37621988
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 180  Q
    |||||||||||   |||||||||||||||||| || ||| ||||||||||||||||||| ||| ||||| | ||||| ||||||    
T  37621905 cttttttggaccacacgtatattatagggtcaaaagtaagaagaatctcaaattacatggttaaaatatctattttttatttta 37621988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 15441595 - 15441489
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 195  Q
    |||||||||||||| |  ||||||| | ||| | ||||||||||||| ||||||||||   ||||||||| || |||| ||||||||| || ||| ||||    
T  15441595 gcttttttggacttcaactatattacatggtgaaaaataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttca 15441496  T
Q  196 gacttcg 202  Q
    |||||||    
T  15441495 gacttcg 15441489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 18829830 - 18829932
Alignment:
Q  131 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaat 230  Q
    ||||||||||||||||||||||| | |||||||||||| |||| |||||| |  |||||| |||||||||    ||||||| |  ||||||||||| |||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactttacatatattacatggtcaatttcaataat 18829929  T
Q  231 taa 233  Q
    |||    
T  18829930 taa 18829932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 17373669 - 17373814
Alignment:
Q  88 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtc 187  Q
    ||||| || ||||||||||| |  ||||||||||| ||||| |||||  |||||||||||||||||   ||||||||| | ||||| |||||| |  |||    
T  17373669 tctagatcacttttttggacctcgcgtatattataaggtcaaaaatacgaagaatctcaaattacagagttagaatatctattttttattttacatggtc 17373768  T
Q  188 attgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    ||| ||||||| | | |||| ||| ||  ||||||| |||||||||    
T  17373769 atttttcagacattgggtattttacaggctcaatttaaacaattaa 17373814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 7071802 - 7071742
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgt 156  Q
    ||||||||||||||  |||||||||  |||| ||||||||||| ||||||||| |||||||    
T  7071802 gcttttttggacttcgcgtatattagtgggttataaataataaaaatctcaaactacatgt 7071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 17444303 - 17444236
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    |||||||||||||| |||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  17444303 gcttttttggacttcacgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 17444236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 26161970 - 26161903
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  26161970 gcttttttggacttcgcgtatattacagggt-ataaataataaaaatctcgaattacatggtcagaata 26161903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 26238201 - 26238130
Alignment:
Q  158 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaa 229  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||||||||||||||| |||||    
T  26238201 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatagagtcaatttgaacaa 26238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 26591355 - 26591296
Alignment:
Q  114 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 173  Q
    ||||||||||||||| |||||| |||||| | |||||||||| |||||||| || |||||    
T  26591355 tatattatagggtcaaaaataagaagaatatgaaattacatggttagaataagtattttt 26591296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 12756107 - 12756065
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataa 138  Q
    ||||||||||||||  ||||||||||||||| |||||||||||    
T  12756107 gcttttttggacttcgcgtatattatagggttataaataataa 12756065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 15512385 - 15512522
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 195  Q
    |||||||||||||| |  ||||||| || |  | ||||||||| ||||||||||||||   ||||||||| ||||||| |||||  ||  ||||| ||||    
T  15512385 gcttttttggacttcaactatattacagagaaaaaaataataaaaatctcaaattacagagttagaatatatgttttttatttttcagcatcatttttca 15512484  T
Q  196 gacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    || ||| | ||||||  |  ||||||||||| ||||||    
T  15512485 gatttcatatatattgcatggtcaatttcaataattaa 15512522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 30325521 - 30325429
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaat------ctcaaattacatgtttagaatatgtgtttttaattttaaag 183  Q
    |||||||||||||   ||||||||||| |||| |||||| |||||       ||||||||||| | ||||||||||||||| |||||||||||    
T  30325521 cttttttggacttcgtgtatattatagagtcaaaaataagaagaaaaaaaaactcaaattacaagattagaatatgtgtttataattttaaag 30325429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 40654140 - 40654213
Alignment:
Q  130 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgt 203  Q
    |||||||||  ||||||||||| | | |||||||||||| |||| | |||| ||||| ||| ||||||||||||    
T  40654140 aaataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttcgt 40654213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 771632 - 771700
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||||| || |||||||| |||||| ||||| ||| | ||||||    
T  771632 gcttttttggacttcgcgtatattacagggttatgaataataaaaatctcgaattatatggtcagaata 771700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 6403071 - 6403004
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  6403071 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 6403004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 18982443 - 18982510
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  18982443 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 18982510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 41250900 - 41250833
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  41250900 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 41250833  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 17458081 - 17458204
Alignment:
Q  88 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagt 186  Q
    ||||| || ||||| |||||||  | |||||||||| |||| |||||| ||||||||||||||||| |  ||||||||||||||||| ||| | |||| |    
T  17458081 tctaggtcacttttatggacttcgcatatattatagcgtcaaaaataagaagaatctcaaattaca-gagtagaatatgtgtttttattttaacaaga-t 17458178  T
Q  187 cattgttcagacttcgtgtatattat 212  Q
    |||| ||||||||  |||||||||||    
T  17458179 catttttcagactaagtgtatattat 17458204  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 17446191 - 17446259
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  17446191 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 17446259  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 41971525 - 41971457
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||||  ||||||||||| |||||||| ||||||||| ||||||    
T  41971525 gcttttttggacttcgcgtatattacagggctataaataataaaaatctcaagttacatgttcagaata 41971457  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 15209557 - 15209490
Alignment:
Q  97 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    |||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||||| ||||||    
T  15209557 cttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatgttcagaata 15209490  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 3829883 - 3829949
Alignment:
Q  98 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  3829883 ttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 3829949  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 17745041 - 17745162
Alignment:
Q  114 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt--tttaattttaaagagtcattgttcagacttcgtgtatatta 211  Q
    ||||||| | ||||| ||||||||| ||||||||||| |||| ||||||||||| ||  ||| |||||| ||  ||||| |||||||||||  |||||||    
T  17745041 tatattacacggtcaaaaataataaaaatctcaaattgcatggttagaatatgtttttattttattttacaggttcatttttcagacttcgaatatatta 17745140  T
Q  212 tagagtcaatttcaacaattaa 233  Q
     |  |||||| |||| ||||||    
T  17745141 catggtcaatgtcaataattaa 17745162  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 9901855 - 9901968
Alignment:
Q  117 attatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagag 216  Q
    |||||||||||| |||||| |||||| | |||||||||| |||||  |||||||||| |||||| ||  | ||| |||| || ||| || ||||| ||||    
T  9901855 attatagggtcaaaaataagaagaatataaaattacatggttaga--atgtgttttttattttataggattatttttcaaacatcgcgtgtattacagag 9901952  T
Q  217 tcaatttcaacaatta 232  Q
    | ||||| ||||||||    
T  9901953 ttaatttgaacaatta 9901968  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 3829291 - 3829166
Alignment:
Q  111 acgtatattatag---ggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtat 207  Q
    |||||||||||||   ||||| |||||| |||||  |||| |||||   ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||    
T  3829291 acgtatattatagggtggtcaaaaataagaagaaattcaagttacaaagttagaatatatgttttgtattttacagggtcatttttcagacataatgtat 3829192  T
Q  208 attatagagtcaatttcaacaattaa 233  Q
    |||| || |||||||| |||||||||    
T  3829191 attacagggtcaatttgaacaattaa 3829166  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 33658895 - 33658941
Alignment:
Q  186 tcattgttcagacttcgtgtatattatagagtcaatttcaacaatta 232  Q
    ||||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  33658895 tcatttttctgacttcgtgtatattatagagtcaatttgaacgatta 33658941  T

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Target: scaffold0134 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 18213 - 18340
Alignment:
Q  106 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 205  Q
    |||| ||| |||||| ||||||||||||||||||||||| || ||||| | ||| ||||||| ||||  ||||||  | ||||||  ||| ||||||  |    
T  18213 acttcacgaatattacagggtcataaataataagaatcttaacttacaggattataatatgttttttatattttactgggtcatttgtcatacttcgctt 18312  T
Q  206 atattatagagtcaatttcaacaattaa 233  Q
    |||||| ||  |||||||||| ||||||    
T  18313 atattacaggatcaatttcaataattaa 18340  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 16793897 - 16793782
Alignment:
Q  87 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagt 186  Q
    |||||| ||| |||| ||||||||  |||||||| | ||| | ||||||||| | |||| ||||| |  ||||||||||||| |||| |||||| |||||    
T  16793897 atctaggtcgtttttctggactttgtgtatattacaaggtaaaaaataataaaactctcgaattatagatttagaatatgtgctttttattttacagagt 16793798  T
Q  187 cattgttcagacttcg 202  Q
     ||| |||||||||||    
T  16793797 aatttttcagacttcg 16793782  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 23217804 - 23217939
Alignment:
Q  98 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcaga 197  Q
    |||||||||||| ||| |||||| |  |||||||||||||||||| |  | ||||| | ||||||||||||||||  ||||||    |||||| ||||||    
T  23217804 ttttttggacttcacgaatattacaaagtcataaataataagaatattgagttacagggttagaatatgtgttttatattttactaggtcatttttcaga 23217903  T
Q  198 cttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    | ||   ||||||| || ||||||||||| ||||||    
T  23217904 catcacttatattacagggtcaatttcaataattaa 23217939  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 28932958 - 28933036
Alignment:
Q  133 taataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 211  Q
    |||||||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| |||||||||||  |||||||    
T  28932958 taataagaatttcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcgcatatatta 28933036  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 28996988 - 28996913
Alignment:
Q  158 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 233  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  28996988 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 28996913  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 399517 - 399584
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  399517 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 399584  T

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Target: scaffold0154 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 32113 - 32181
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||    
T  32113 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaata 32181  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 479724 - 479657
Alignment:
Q  96 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 164  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  479724 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 479657  T

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