View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4006_low_1 (Length: 383)

Name: NF4006_low_1
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4006_low_1
NF4006_low_1
[»] chr7 (33 HSPs)
chr7 (194-376)||(19305906-19306088)
chr7 (204-376)||(32523212-32523384)
chr7 (182-376)||(28408230-28408425)
chr7 (194-376)||(32177856-32178038)
chr7 (194-363)||(2933444-2933613)
chr7 (203-371)||(37453234-37453402)
chr7 (206-376)||(8437467-8437638)
chr7 (194-368)||(49113863-49114037)
chr7 (204-376)||(45746886-45747058)
chr7 (194-376)||(7417512-7417695)
chr7 (194-369)||(32832235-32832411)
chr7 (194-376)||(1511349-1511531)
chr7 (263-376)||(44307688-44307800)
chr7 (203-314)||(32523426-32523538)
chr7 (260-376)||(29226337-29226452)
chr7 (180-314)||(28408465-28408599)
chr7 (194-314)||(8437306-8437427)
chr7 (194-376)||(10878626-10878809)
chr7 (203-314)||(32178078-32178190)
chr7 (203-297)||(32832475-32832569)
chr7 (194-311)||(31894259-31894374)
chr7 (194-314)||(7417736-7417856)
chr7 (203-294)||(2933296-2933387)
chr7 (204-294)||(24986729-24986819)
chr7 (194-314)||(49114085-49114207)
chr7 (194-251)||(19305741-19305798)
chr7 (264-316)||(27612277-27612329)
chr7 (266-376)||(30060566-30060675)
chr7 (194-250)||(44307612-44307668)
chr7 (194-294)||(1511191-1511290)
chr7 (194-294)||(31894500-31894599)
chr7 (260-294)||(37453145-37453179)
chr7 (218-251)||(37452478-37452511)
[»] chr5 (39 HSPs)
chr5 (194-376)||(18485822-18486004)
chr5 (180-376)||(40833923-40834119)
chr5 (194-376)||(32936368-32936550)
chr5 (194-374)||(2094737-2094917)
chr5 (194-376)||(7145534-7145721)
chr5 (194-376)||(13600608-13600790)
chr5 (194-376)||(20769713-20769895)
chr5 (204-376)||(3539759-3539930)
chr5 (194-376)||(30370673-30370855)
chr5 (194-376)||(35363146-35363334)
chr5 (185-360)||(27843015-27843189)
chr5 (194-376)||(35362080-35362262)
chr5 (194-376)||(132211-132391)
chr5 (194-309)||(19558102-19558217)
chr5 (194-376)||(15178952-15179134)
chr5 (194-314)||(32936207-32936328)
chr5 (194-314)||(35362985-35363106)
chr5 (194-294)||(18485660-18485760)
chr5 (194-294)||(40834180-40834280)
chr5 (194-314)||(2094576-2094697)
chr5 (206-314)||(7145762-7145871)
chr5 (194-294)||(30370512-30370612)
chr5 (265-316)||(14274308-14274359)
chr5 (203-314)||(20769935-20770048)
chr5 (194-314)||(13600445-13600568)
chr5 (210-376)||(25363033-25363198)
chr5 (194-376)||(32994309-32994499)
chr5 (212-316)||(38981783-38981887)
chr5 (266-313)||(3294396-3294443)
chr5 (265-316)||(33568984-33569035)
chr5 (266-309)||(42858555-42858598)
chr5 (189-251)||(20339152-20339214)
chr5 (204-294)||(3539608-3539699)
chr5 (194-244)||(37093738-37093788)
chr5 (265-310)||(27342885-27342930)
chr5 (266-309)||(19850516-19850559)
chr5 (194-310)||(29171494-29171609)
chr5 (184-250)||(32458075-32458142)
chr5 (181-250)||(3294584-3294654)
[»] chr2 (35 HSPs)
chr2 (194-376)||(2318494-2318675)
chr2 (194-377)||(9319964-9320147)
chr2 (194-376)||(18916626-18916808)
chr2 (194-376)||(20364133-20364315)
chr2 (194-374)||(17846009-17846189)
chr2 (194-376)||(10044746-10044928)
chr2 (203-376)||(44536346-44536520)
chr2 (194-376)||(10108814-10108997)
chr2 (203-368)||(4261163-4261328)
chr2 (194-376)||(27360120-27360304)
chr2 (194-376)||(601328-601512)
chr2 (203-314)||(9319812-9319924)
chr2 (206-312)||(8322411-8322515)
chr2 (194-314)||(27360345-27360466)
chr2 (194-376)||(30337425-30337607)
chr2 (204-314)||(17846231-17846342)
chr2 (206-314)||(18916848-18916957)
chr2 (194-314)||(20363971-20364092)
chr2 (194-294)||(2318735-2318834)
chr2 (203-316)||(13862503-13862615)
chr2 (194-314)||(4261376-4261500)
chr2 (264-310)||(37084688-37084734)
chr2 (208-314)||(10109038-10109146)
chr2 (266-316)||(9991921-9991971)
chr2 (194-251)||(601620-601677)
chr2 (266-307)||(10520866-10520907)
chr2 (271-316)||(43520394-43520439)
chr2 (271-376)||(5547242-5547347)
chr2 (203-250)||(5547339-5547386)
chr2 (266-363)||(31769961-31770057)
chr2 (181-251)||(44536166-44536237)
chr2 (278-316)||(41385779-41385817)
chr2 (275-309)||(44769387-44769421)
chr2 (283-316)||(40044523-40044556)
chr2 (194-250)||(18178377-18178433)
[»] chr1 (32 HSPs)
chr1 (196-376)||(40902490-40902670)
chr1 (194-376)||(1549328-1549510)
chr1 (180-376)||(2026708-2026904)
chr1 (194-376)||(17985451-17985632)
chr1 (194-376)||(30562785-30562966)
chr1 (206-376)||(17611587-17611757)
chr1 (195-376)||(30002372-30002552)
chr1 (203-376)||(25780052-25780224)
chr1 (194-376)||(12139025-12139207)
chr1 (194-376)||(7114026-7114207)
chr1 (203-294)||(17985297-17985388)
chr1 (194-314)||(17611426-17611547)
chr1 (194-294)||(40902328-40902428)
chr1 (194-314)||(2026943-2027064)
chr1 (203-314)||(30002221-30002333)
chr1 (263-376)||(12115024-12115136)
chr1 (194-288)||(7113866-7113960)
chr1 (189-294)||(12115196-12115301)
chr1 (216-376)||(4969387-4969548)
chr1 (194-289)||(12139273-12139369)
chr1 (263-376)||(19897340-19897452)
chr1 (194-294)||(30563027-30563128)
chr1 (203-314)||(25779895-25780011)
chr1 (204-294)||(19897187-19897277)
chr1 (205-251)||(29233699-29233745)
chr1 (264-316)||(47193951-47194003)
chr1 (265-315)||(30306852-30306902)
chr1 (266-312)||(44066951-44066997)
chr1 (208-251)||(34480440-34480483)
chr1 (267-309)||(9172266-9172308)
chr1 (267-309)||(9180248-9180290)
chr1 (194-251)||(49564186-49564243)
[»] chr4 (59 HSPs)
chr4 (194-376)||(13294603-13294786)
chr4 (203-376)||(50161279-50161452)
chr4 (196-376)||(5260197-5260376)
chr4 (194-376)||(23163442-23163624)
chr4 (194-376)||(48419379-48419561)
chr4 (194-376)||(49621440-49621622)
chr4 (194-376)||(9525971-9526153)
chr4 (194-376)||(33692263-33692445)
chr4 (194-376)||(21707765-21707947)
chr4 (194-376)||(28458684-28458866)
chr4 (194-374)||(21053460-21053640)
chr4 (206-376)||(3546501-3546672)
chr4 (194-376)||(26202523-26202705)
chr4 (194-376)||(42856964-42857146)
chr4 (194-376)||(20931139-20931322)
chr4 (194-376)||(33369510-33369695)
chr4 (194-368)||(52690266-52690442)
chr4 (194-376)||(41689390-41689575)
chr4 (194-376)||(46143434-46143615)
chr4 (194-376)||(55140199-55140379)
chr4 (194-374)||(37872768-37872944)
chr4 (260-376)||(23549660-23549776)
chr4 (203-314)||(33369735-33369847)
chr4 (194-314)||(23163282-23163403)
chr4 (194-314)||(49621661-49621782)
chr4 (194-294)||(13294847-13294947)
chr4 (194-376)||(25297681-25297865)
chr4 (194-297)||(20930976-20931079)
chr4 (194-376)||(2685986-2686162)
chr4 (263-376)||(30799391-30799503)
chr4 (183-314)||(42856794-42856925)
chr4 (324-376)||(55742739-55742791)
chr4 (194-314)||(9525806-9525930)
chr4 (203-294)||(50161125-50161218)
chr4 (203-314)||(28458531-28458644)
chr4 (206-314)||(37872986-37873095)
chr4 (194-314)||(46143273-46143394)
chr4 (194-314)||(3546712-3546835)
chr4 (194-376)||(30055209-30055393)
chr4 (267-363)||(50977627-50977723)
chr4 (194-314)||(55742831-55742952)
chr4 (194-314)||(33692486-33692606)
chr4 (194-314)||(52690097-52690217)
chr4 (264-363)||(22335505-22335602)
chr4 (206-294)||(5260437-5260525)
chr4 (206-314)||(21707616-21707724)
chr4 (203-251)||(30799302-30799350)
chr4 (203-314)||(41689615-41689727)
chr4 (265-309)||(53232328-53232372)
chr4 (192-251)||(30799611-30799670)
chr4 (194-295)||(55742622-55742723)
chr4 (264-316)||(17872388-17872440)
chr4 (194-250)||(55140485-55140541)
chr4 (260-314)||(21053365-21053420)
chr4 (203-250)||(25297969-25298016)
chr4 (204-250)||(9851907-9851953)
chr4 (194-248)||(30055494-30055548)
chr4 (264-309)||(563721-563765)
chr4 (265-302)||(43914640-43914676)
[»] chr3 (45 HSPs)
chr3 (194-376)||(8851967-8852150)
chr3 (194-374)||(22316721-22316901)
chr3 (194-376)||(37513092-37513274)
chr3 (203-376)||(36229773-36229946)
chr3 (194-376)||(55009100-55009280)
chr3 (217-376)||(49621002-49621161)
chr3 (194-374)||(22975346-22975526)
chr3 (204-376)||(25847456-25847628)
chr3 (215-373)||(49984876-49985034)
chr3 (194-376)||(28829754-28829935)
chr3 (193-376)||(48433965-48434148)
chr3 (194-376)||(23043352-23043534)
chr3 (194-369)||(11121284-11121459)
chr3 (270-373)||(9296547-9296650)
chr3 (190-376)||(49711562-49711747)
chr3 (203-376)||(44506056-44506229)
chr3 (186-294)||(8851797-8851905)
chr3 (194-314)||(25847668-25847789)
chr3 (194-289)||(37513340-37513435)
chr3 (194-376)||(17574374-17574553)
chr3 (194-294)||(22316964-22317064)
chr3 (186-294)||(11121526-11121635)
chr3 (194-314)||(49621202-49621323)
chr3 (203-294)||(22975589-22975680)
chr3 (194-251)||(33491692-33491749)
chr3 (203-314)||(55009321-55009434)
chr3 (203-294)||(36230007-36230099)
chr3 (266-376)||(3612759-3612870)
chr3 (194-314)||(28829975-28830097)
chr3 (189-314)||(49711397-49711522)
chr3 (205-314)||(48433810-48433922)
chr3 (203-314)||(9296393-9296504)
chr3 (264-316)||(35850872-35850924)
chr3 (264-309)||(1341957-1342002)
chr3 (266-315)||(12012782-12012831)
chr3 (194-294)||(44506288-44506388)
chr3 (266-308)||(43006987-43007029)
chr3 (194-251)||(33491603-33491660)
chr3 (203-294)||(3612605-3612697)
chr3 (272-316)||(7603616-7603660)
chr3 (203-251)||(10687880-10687928)
chr3 (264-309)||(34333730-34333775)
chr3 (215-251)||(1342180-1342216)
chr3 (215-251)||(7603683-7603719)
chr3 (203-251)||(23043193-23043241)
[»] chr6 (17 HSPs)
chr6 (180-376)||(3218304-3218499)
chr6 (194-376)||(3922701-3922883)
chr6 (192-376)||(33595318-33595502)
chr6 (194-376)||(4242924-4243106)
chr6 (190-371)||(14763315-14763496)
chr6 (194-376)||(23068860-23069040)
chr6 (260-376)||(6754984-6755100)
chr6 (194-314)||(23068697-23068818)
chr6 (194-314)||(33595543-33595664)
chr6 (193-314)||(3218151-3218273)
chr6 (194-314)||(4243146-4243267)
chr6 (194-314)||(6755140-6755261)
chr6 (194-288)||(3922540-3922634)
chr6 (186-370)||(10810145-10810328)
chr6 (194-294)||(14763550-14763652)
chr6 (264-308)||(20491722-20491766)
chr6 (268-309)||(11000055-11000096)
[»] chr8 (35 HSPs)
chr8 (185-376)||(30904523-30904713)
chr8 (194-376)||(2967871-2968054)
chr8 (194-376)||(27912096-27912279)
chr8 (194-376)||(27958515-27958698)
chr8 (194-376)||(35482703-35482885)
chr8 (203-376)||(17875778-17875951)
chr8 (203-376)||(10682222-10682396)
chr8 (203-376)||(17844045-17844216)
chr8 (194-376)||(44379523-44379705)
chr8 (194-370)||(23792749-23792924)
chr8 (263-376)||(20223176-20223288)
chr8 (194-314)||(2968093-2968214)
chr8 (205-376)||(13327425-13327598)
chr8 (186-294)||(27912342-27912450)
chr8 (186-294)||(27958761-27958869)
chr8 (194-376)||(30928476-30928657)
chr8 (194-376)||(3691583-3691766)
chr8 (194-314)||(17875993-17876114)
chr8 (194-314)||(35482925-35483046)
chr8 (264-316)||(38464711-38464763)
chr8 (204-376)||(4128752-4128924)
chr8 (194-314)||(30904362-30904483)
chr8 (194-376)||(27523118-27523299)
chr8 (263-376)||(42123864-42123977)
chr8 (263-376)||(7899830-7899943)
chr8 (194-314)||(10682062-10682182)
chr8 (194-314)||(14577087-14577210)
chr8 (266-309)||(31231317-31231360)
chr8 (194-250)||(20178372-20178428)
chr8 (194-250)||(20223100-20223156)
chr8 (219-289)||(38464887-38464957)
chr8 (208-251)||(42685044-42685087)
chr8 (338-376)||(14577010-14577048)
chr8 (203-314)||(17843890-17844005)
chr8 (194-250)||(13327263-13327319)
[»] scaffold0029 (2 HSPs)
scaffold0029 (188-375)||(137079-137264)
scaffold0029 (194-314)||(136917-137038)
[»] scaffold0002 (2 HSPs)
scaffold0002 (188-375)||(330360-330545)
scaffold0002 (194-314)||(330198-330319)
[»] scaffold0311 (2 HSPs)
scaffold0311 (231-376)||(12635-12780)
scaffold0311 (188-294)||(12841-12947)
[»] scaffold1577 (2 HSPs)
scaffold1577 (186-376)||(1035-1224)
scaffold1577 (263-314)||(943-995)
[»] scaffold0347 (1 HSPs)
scaffold0347 (194-249)||(12223-12278)
[»] scaffold0053 (1 HSPs)
scaffold0053 (265-312)||(15263-15310)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 19306088 - 19305906
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  19306088 gcaaaatagcacaattagtcccttaactttattttagttaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 19305989  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19305988 atatcttatcattttttatgagatttttttcaaagaaatttgattttctatgcttgtatgatgaagatttatgtttgcctatg 19305906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 32523212 - 32523384
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatc 303  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  32523212 acaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttatc 32523311  T
Q  304 attttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32523312 attttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 32523384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 182 - 376
Target Start/End: Original strand, 28408230 - 28408425
Alignment:
Q  182 aaataaaattaag-caaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatg 280  Q
    ||||||||||| | ||||||  ||||||||| | ||||||||||||||| |||||||||||||||||||||        |||| ||||||||||||||||    
T  28408230 aaataaaattatgacaaaattacacaattagccccttaactttattttaggtaacactttcgtcctttatcttttttttgtcatgatttagtcctttatg 28408329  T
Q  281 ttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  28408330 ttataaaatgacaatatcttatcattttttatgagatttttttcaaagaaatttgattttatatgcgtgtatgatgaagatttacgtttgcctatg 28408425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 32177856 - 32178038
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||  |||||||||||||| |||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  32177856 gcaaaattacacaattagtcctttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 32177955  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  32177956 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggtttgtatgatgaagatttacgtttgcctatg 32178038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 194 - 363
Target Start/End: Complemental strand, 2933613 - 2933444
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||         |||||||||||||||||||||||||||||||| |    
T  2933613 gcaaaatagcacaattagttccttaactttattttaggtaacactttcgtcctttattttttttttgtcacgatttagtcctttatgttataaaatgaaa 2933514  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagattt 363  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||    
T  2933513 atatcttatcattttttatgagattcttttcaaagaaatttgattttctatgcttgtatgatgaaaattt 2933444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 37453402 - 37453234
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||    
T  37453402 cacaatcagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacggtttagtcctttatgttataaaatgacaatatcttat 37453303  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgc 371  Q
    |||||||||||| |       |||||||||||||||||||| |||||||||||||||||||||||||||    
T  37453302 cattttttatgaaatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgc 37453234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 8437638 - 8437467
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgacaatatcttatca 304  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||||| |||||||||||||    
T  8437638 aattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaatgccaatatcttatca 8437539  T
Q  305 ttttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||       ||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  8437538 ttttttatgagatttttttcaaagaaatttaattttctaggcttgtatgatgaagatttacgtttgcctatg 8437467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 194 - 368
Target Start/End: Original strand, 49113863 - 49114037
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||  |||||||||||||| |||||||||||||||||||||        || |||||||||||||||||||||||||||||||    
T  49113863 gcaaaattacacaattagtcctttaactttattttaggtaacactttcgtcctttatcttttttttgttacgatttagtcctttatgttataaaatgaca 49113962  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtt 368  Q
    |||||||||||||||||||||||       |||||||||||||||||| | ||||||||||||||||||||||||    
T  49113963 atatcttatcattttttatgagatttttttcaaagaaatttgattttccaggcttgtatgatgaagatttacgtt 49114037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 204 - 376
Target Start/End: Complemental strand, 45747058 - 45746886
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatc 303  Q
    ||||||||| |||||| ||||||||| |||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||    
T  45747058 acaattagtttcttaattttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtc-tttatgttataaaatgacaatatcttatc 45746960  T
Q  304 attttttatgaga-nnnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||        |||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  45746959 attttttatgagattttttttcaaagaaatttgattttctaggcttgtatgatgaagatttgcgtttgcctatg 45746886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 7417512 - 7417695
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  |||||||| || ||||||||||||||| |||||| ||||||||||||||         |||||||||||||||||||||||||||||||||    
T  7417512 gcaaaattacacaattaatcccttaactttattttaggtaacattttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaatgac 7417611  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||| |||||||        |||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  7417612 aatatcttatcattttgtatgagattttttttaaagaaatttgattttctagacttgtatgatgaagatttgcgtttgcctatg 7417695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 32832235 - 32832411
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    ||||||||  |||||||||| ||||| ||||||||| ||||||||||  || ||||||        ||||| ||||||||||||||||||||||||||||    
T  32832235 gcaaaataatacaattagtcccttaattttattttaggtaacacttttatcttttatcttttttttgtcacaatttagtcctttatgttataaaatgaca 32832334  T
Q  294 atatcttatcattttttatgaga-nnnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgttt 369  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||    
T  32832335 atatcttatcattttttatgagattttttttcaaagaaatttgattttctatgcttgtatgatgaaaatttacgttt 32832411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 1511531 - 1511349
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| |||||||| | |||| |||||||||||||||||||||        || |||||||||||||||||||||||||||||||    
T  1511531 gcaaaattacacaattagtcccttaacttaaatttaggtaacactttcgtcctttatcttttttt-gtaacgatttagtcctttatgttataaaatgaca 1511433  T
Q  294 atatcttatcatt--ttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     ||| ||||||||  ||||||||||       ||| |||||||||||||||| | | |||||||||||||||||||||| |||||    
T  1511432 ctattttatcattttttttatgaga-ttttttcaatgaaatttgattttctaggttagtatgatgaagatttacgtttgtctatg 1511349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 44307688 - 44307800
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatt 362  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||       ||| |||||||||||||||| ||| ||||||||||||||    
T  44307688 acgatttagtcctttatattataaaatgacactattttatcattttttatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaagatt 44307786  T
Q  363 tacgtttgcctatg 376  Q
    |||||||| |||||    
T  44307787 tacgtttgtctatg 44307800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 32523538 - 32523426
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||| ||  |||    
T  32523538 cacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttatttgtcacgatttagtcctttatgttataaaataacaacatagtta 32523439  T
Q  302 tcattttttatga 314  Q
    || ||||||||||    
T  32523438 tccttttttatga 32523426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 29226337 - 29226452
Alignment:
Q  260 gtcacgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaag 359  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||| ||||||||||||||||   |||||| ||||||    
T  29226337 gtcacgatttagtcctttatgttataaaatgataatatcttatcattttttatgag-tttttttcaatgaaatttgattttctaaaattgtataatgaag 29226435  T
Q  360 atttacgtttgcctatg 376  Q
    |||| |||||| |||||    
T  29226436 atttgcgtttgtctatg 29226452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 314
Target Start/End: Complemental strand, 28408599 - 28408465
Alignment:
Q  180 ataaataaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttat 279  Q
    ||||||||  ||| |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||    
T  28408599 ataaataattttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatc-tttttttgtcacgatttagtcctttat 28408501  T
Q  280 gttataaaatgacaatat-cttatcattttttatga 314  Q
    |||||||||| |||| ||  ||||| ||||||||||    
T  28408500 gttataaaataacaacatagttatccttttttatga 28408465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 8437306 - 8437427
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||| ||||||||||||||||||||||||| |||    
T  8437306 gcaaaattacacaattagtcccttaactttattttatgtaacactttcgtcctttatcttttttctgtcatgatttagtcctttatgttataaaataaca 8437405  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  8437406 acatagttatccttttttatga 8437427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 10878626 - 10878809
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn--gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||||          || |||||||||||||||||||||||||||||    
T  10878626 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttatcttttttttttgtaacgatttagtcctttatgttataaaatga 10878725  T
Q  292 caatatcttatca-ttttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    || ||| |||||| ||||||||||||       ||| ||||||||| |||||| ||| ||||||||| ||||| |||||| |||||    
T  10878726 cactattttatcatttttttatgaga-ttttttcaatgaaatttga-tttctaggctagtatgatgacgatttgcgtttgtctatg 10878809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 32178190 - 32178078
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||||        |||||||||||||||||||||||||||||| |||| ||  |||    
T  32178190 cacaattagtcccttaactttattttaggtaacacttttgtcctttatctttcttttgtcacgatttagtcctttatgttataaaataacaacatagtta 32178091  T
Q  302 tcattttttatga 314  Q
    || ||||||||||    
T  32178090 tccttttttatga 32178078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 32832569 - 32832475
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat 297  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||| |||||||    
T  32832569 cacaattagtcccttaattttattttaggtaacactttcgtcctttatcttttttttatcacgatttagtcctttatgttataaaataacaatat 32832475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 311
Target Start/End: Original strand, 31894259 - 31894374
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||| ||||| |||||||| |||||| ||||||||||||||||||||         || |||||||||||||||||||||||||||||||    
T  31894259 gcaaaattacacaaatagtcccttaacttaattttaggtaacactttcgtcctttat--tttttttgtaacgatttagtcctttatgttataaaatgaca 31894356  T
Q  294 atatcttatcatttttta 311  Q
     ||| |||||||||||||    
T  31894357 ctattttatcatttttta 31894374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 7417856 - 7417736
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||| ||||||||||| |||    
T  7417856 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatc-tttttttgtcacgatttagtcctttttgttataaaataaca 7417758  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  7417757 acatagttatccttttttatga 7417736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 2933296 - 2933387
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||||         ||||||||||||||||||||||||||||| ||||    
T  2933296 cacaattagtcccttaactttattttaggtaacactttcatcctttatcttttttttatcacgatttagtcctttatgttataaaataacaa 2933387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 24986729 - 24986819
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||||||  |||| ||||||||| ||||||||||||||||||||         |||||||||||||||||||||||||||||| ||||    
T  24986729 acaattagtcctttaattttattttaggtaacactttcgtcctttattttttttttgtcacgatttagtcctttatgttataaaataacaa 24986819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 49114207 - 49114085
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||| | ||||||||||| ||    
T  49114207 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctctgtgttataaaataac 49114108  T
Q  293 aatat-cttatcattttttatga 314  Q
    || ||  ||||| ||||||||||    
T  49114107 aacatagttatccttttttatga 49114085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 19305741 - 19305798
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  19305741 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatc 19305798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 27612329 - 27612277
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  27612329 cgatttagtcttatatgttataaaatgacaatatcttatcatttttaatgaga 27612277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 376
Target Start/End: Complemental strand, 30060675 - 30060566
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttac 365  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| ||||       ||| |||||  |||||||| || |||||||||||||||||      
T  30060675 atttagtcctttatgttatgaaatgacaatattttatcattttttaagaga-ttttttcaatgaaatcggattttctttgtttgtatgatgaagatttgg 30060577  T
Q  366 gtttgcctatg 376  Q
    |||||| ||||    
T  30060576 gtttgcttatg 30060566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 44307612 - 44307668
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||||  ||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  44307612 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 44307668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 1511191 - 1511290
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| |||||||| |||||| |||| | |||||||||||||         || ||||||||||||||||||||||||||| |||    
T  1511191 gcaaaattacacaattagtcccttaacttaattttaggtaatattttcgtcctttat-ttttttttgtaacgatttagtcctttatgttataaaataaca 1511289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 31894599 - 31894500
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| |||||||| ||||||  ||||| |||||||||||||         || ||||||||||||||||||||||||||| |||    
T  31894599 gcaaaattacacaattagtcccttaacttaattttagataacattttcgtcctttat-ttttttttgtaacgatttagtcctttatgttataaaataaca 31894501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 37453145 - 37453179
Alignment:
Q  260 gtcacgatttagtcctttatgttataaaatgacaa 294  Q
    |||||||||||||||||||||||||||||| ||||    
T  37453145 gtcacgatttagtcctttatgttataaaataacaa 37453179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 37452478 - 37452511
Alignment:
Q  218 aactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||||||| |||||||||||||||||||||    
T  37452478 aactttattttaggtaacactttcgtcctttatc 37452511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 18486004 - 18485822
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||| |||||||||||||    
T  18486004 gcaaaatagcacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatcttataaaatgaca 18485905  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18485904 atatcttatcattttttatgagatttttttcaaagaaatttaattttctatgcttgtatgatgaagatttacgtttgcctatg 18485822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 180 - 376
Target Start/End: Original strand, 40833923 - 40834119
Alignment:
Q  180 ataaataaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttat 279  Q
    ||||| ||||| | |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||    
T  40833923 ataaaaaaaataaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttat 40834022  T
Q  280 gttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40834023 gttataaaatgacaatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 40834119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 32936550 - 32936368
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  32936550 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 32936451  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  32936450 atatcttatcattttttatgagatttttttcaaagaaatttgattttatatgcgtgtatgatgaagatttacgtttgcctatg 32936368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 2094917 - 2094737
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||| |||||||||        |||||||||||||||||||| |||||||||||||    
T  2094917 gcaaaattacacaattagtcccttaactttattttaggtaacactttcatcctttatcttttttttgtcacgatttagtcctttatattataaaatgaca 2094818  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgccta 374  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2094817 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgccta 2094737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 7145534 - 7145721
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-----gtcacgatttagtcctttatgttataaaa 288  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||             |||||||||||||||||||||||||||||    
T  7145534 gcaaaataacacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttttttgtcacgatttagtcctttatgttataaaa 7145633  T
Q  289 tgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7145634 tgacaatatcttatcattttttatgagatttttttcaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcatatg 7145721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 13600790 - 13600608
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||||||||||||||| || |||||||||||||||||||||        |||||||||||||||||||||||||||||||| |    
T  13600790 gcaaaattacacaattagtctcttaactttattgtaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgata 13600691  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  13600690 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgataaagatttgcgtttgcctatg 13600608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 20769713 - 20769895
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  20769713 gcaaaattacacaattagtcccttaactttattttaggtaatactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 20769812  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  20769813 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgttgaagatttgcgtttgcctatg 20769895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 204 - 376
Target Start/End: Complemental strand, 3539930 - 3539759
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatc 303  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  3539930 acaattagtctcataattttattttaggtaacactttcgtcctttat-ttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttatc 3539832  T
Q  304 attttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||       |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  3539831 attttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttatgtttgcctatg 3539759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 30370855 - 30370673
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| | |||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  30370855 gcaaaattacacaattagtcccttaactttattttaggcaacactttcgtcctttatcttttttt-gtcacgatttagtcctttatgttataaaatgaca 30370757  T
Q  294 atatcttatcattttttatgaga-nnnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||| |        ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30370756 atatcttatcattttttatgaaattttttttcaaagaaatttgattttatatgcttgtatgatgaagatttacgtttgcctatg 30370673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 35363334 - 35363146
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  35363334 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttcttttttgtcacgatttagtcctttatgttataaaatgac 35363235  T
Q  293 aatatcttatcatt-----ttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||| |     ||||||||||       ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  35363234 aatatcttatcagttttaattttatgagatttttttcaaagaaatttgactttctaggcttgtatgatgaagatttacgtttgcctatg 35363146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 360
Target Start/End: Original strand, 27843015 - 27843189
Alignment:
Q  185 taaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttat 284  Q
    |||||||  |||||||  || |||||||| |||||||| |||||| |||||| ||||||||||||||        || ||||||||||| ||||||||||    
T  27843015 taaaatttggcaaaattacataattagtcccttaacttaattttaggtaacattttcgtcctttatcttttttttgtaacgatttagtcttttatgttat 27843114  T
Q  285 aaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaaga 360  Q
    ||||||||||||| ||||||||||||||||||       ||| |||||||||||||||| | ||||||||||||||    
T  27843115 aaaatgacaatattttatcattttttatgaga-tttttccaatgaaatttgattttctaggtttgtatgatgaaga 27843189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 35362262 - 35362080
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| |||||||| |||||| ||||| |||||||||||||||        || |||||||||||||||||||||||||||||||    
T  35362262 gcaaaattacacaattagtcccttaacttaattttaggtaacgctttcgtcctttatcttttttctgtaacgatttagtcctttatgttataaaatgaca 35362163  T
Q  294 atatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     ||| ||||||||||| |||||||       ||| |||||||||||||||| ||| |||||||||||||||  ||||| |||||    
T  35362162 ctattttatcatttttgtatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaagatttgtgtttgtctatg 35362080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 132391 - 132211
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    ||||||| |||||||||||  |||||||||  |||| |||||||||||||||||||||        || |||||||||||||||||||||||||||||||    
T  132391 gcaaaattgcacaattagttacttaacttt--tttaggtaacactttcgtcctttatcttttttctgtaacgatttagtcctttatgttataaaatgaca 132294  T
Q  294 atatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     ||| ||||||||||| |||||||       ||| |||||||||||||||| ||| |||||||||||||||  ||||| |||||    
T  132293 ctattttatcatttttgtatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaagatttgtgtttgtctatg 132211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 19558217 - 19558102
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||||        || |||||||||||||||||||||||||||||||    
T  19558217 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttatcttttttctgtaacgatttagtcctttatgttataaaatgaca 19558118  T
Q  294 atatcttatcattttt 309  Q
     ||| |||||||||||    
T  19558117 ctattttatcattttt 19558102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 15179134 - 15178952
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||||         | |||||||||||||||||||||||||||||||    
T  15179134 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttatcttttttttttaacgatttagtcctttatgttataaaatgaca 15179035  T
Q  294 atatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     ||| ||||||||||| |||||||       ||| |||||||||||||||   || |||||||||||||||  ||||| |||||    
T  15179034 ctattttatcatttttgtatgaga-ttttttcaatgaaatttgattttcttgactagtatgatgaagatttgagtttgtctatg 15178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 32936207 - 32936328
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  32936207 gcaaaattacacaattagtcacttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 32936306  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  32936307 acatagttatccttttttatga 32936328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 35362985 - 35363106
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  35362985 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcctttttttgtcacgatttagtcctttatgttataaaataaca 35363084  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  35363085 acatagttatccttttttatga 35363106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 18485660 - 18485760
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||| |||||||||||||||||||||||| |||    
T  18485660 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttgttgtcacaatttagtcctttatgttataaaataaca 18485759  T
Q  294 a 294  Q
    |    
T  18485760 a 18485760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 40834280 - 40834180
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||| |||||||||||||||||||||||| |||    
T  40834280 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttctttgtcacaatttagtcctttatgttataaaataaca 40834181  T
Q  294 a 294  Q
    |    
T  40834180 a 40834180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 2094576 - 2094697
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||| || ||||||||||||||| |||||||||| ||||||||||        |||||||||||||||||||||||||||||| |||    
T  2094576 gcaaaattacacaattaatcccttaactttattttaggtaacactttggtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 2094675  T
Q  294 a-tatcttatcattttttatga 314  Q
    |  |  ||||||||||||||||    
T  2094676 acaaagttatcattttttatga 2094697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 7145871 - 7145762
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-cttatca 304  Q
    ||||| || ||||||||||||||| |||||| ||||||||||||||        |||||||||||||||||||||||||||||| |||| ||  ||||||    
T  7145871 aattaatcccttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataacaacatagttatca 7145772  T
Q  305 ttttttatga 314  Q
    ||||||||||    
T  7145771 ttttttatga 7145762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 30370512 - 30370612
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||| ||||||        |||||||||||||| ||||||||||||||| |||    
T  30370512 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcttttatcttttttttgtcacgatttagtcatttatgttataaaataaca 30370611  T
Q  294 a 294  Q
    |    
T  30370612 a 30370612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 14274308 - 14274359
Alignment:
Q  265 gatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14274308 gatttagtcctttatgttataaaatgacaatatcttattattttttatgaga 14274359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 20770048 - 20769935
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgacaatat-ctt 300  Q
    ||||||||||| |||||| |||||||| ||||||||| |||||||||||         |||||||||||||||||||||||||||||| |||||||  ||    
T  20770048 cacaattagtcccttaacattattttaggtaacacttccgtcctttatctttttttttgtcacgatttagtcctttatgttataaaataacaatatagtt 20769949  T
Q  301 atcattttttatga 314  Q
    ||| ||||||||||    
T  20769948 atccttttttatga 20769935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 13600445 - 13600568
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn--gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  |||||||||||  ||| |||||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||||| |    
T  13600445 gcaaaattacacaattagtcctttacctttattttaggtaacactttcgtcctttatcttttttttttgtcacgatttagtcctttatgttataaaataa 13600544  T
Q  292 caatat-cttatcattttttatga 314  Q
    ||| ||  ||||||||||||||||    
T  13600545 caacatagttatcattttttatga 13600568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 376
Target Start/End: Original strand, 25363033 - 25363198
Alignment:
Q  210 agtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    |||| |||||||| |||||| |||||||||||||| ||||||        || ||||||||||||||||||||||||||||||| ||| |||||||||||    
T  25363033 agtcccttaacttaattttaggtaacactttcgtcatttatcttttttt-gtaacgatttagtcctttatgttataaaatgacactattttatcattttt 25363131  T
Q  310 -tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     | |||||       ||| |||||||||||||||   || ||||||||||||||| |||||| |||||    
T  25363132 gtttgaga-tttattcaatgaaatttgattttcttgactagtatgatgaagatttgcgtttgtctatg 25363198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 32994499 - 32994309
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc--------nnnnnnnngtcacgatttagtcctttatgttata 285  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||||                || |||||||||||||||||||||||    
T  32994499 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttatcttttttttttttttttgtaacgatttagtcctttatgttata 32994400  T
Q  286 aaatgacaatatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||| ||| ||||||||||| |||||||       ||| |||||||||||||||   || ||||||||||||||| |||||| |||||    
T  32994399 aaatgacactattttatcatttttgtatgaga-ttttttcaatgaaatttgattttcttgactagtatgatgaagatttgcgtttgtctatg 32994309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 38981887 - 38981783
Alignment:
Q  212 tctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatcatttttta 311  Q
    |||||||| || |||||| ||||||||||||||||| |||         || ||||||||||| ||||||||||||||||||| | ||||||| ||||||    
T  38981887 tctcttaatttaattttaggtaacactttcgtccttcatctttttttcatctcgatttagtcccttatgttataaaatgacaacaccttatcaattttta 38981788  T
Q  312 tgaga 316  Q
    |||||    
T  38981787 tgaga 38981783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 3294396 - 3294443
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttttatg 313  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3294396 atttagtcctttatgttataaaatgataatatcttattattttttatg 3294443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 33568984 - 33569035
Alignment:
Q  265 gatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||| || ||||||||||||||||||||||||||||||||||| ||||||    
T  33568984 gatttaatcatttatgttataaaatgacaatatcttatcatttttaatgaga 33569035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 42858598 - 42858555
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  42858598 atttagtcctttatgttataaaatgtcaatatcttatcattttt 42858555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 20339152 - 20339214
Alignment:
Q  189 attaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||| |||||||  |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  20339152 attaggcaaaattacacaattaatcccttaactttattttaggtaacactttcgtcctttatc 20339214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 3539608 - 3539699
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||| || ||||||||||||||| |||||| ||||||||||||||         ||||| |||||||||||||||||||||||| ||||    
T  3539608 acaattaatcccttaactttattttaggtaacattttcgtcctttatctttttttttgtcacaatttagtcctttatgttataaaataacaa 3539699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 37093788 - 37093738
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtc 244  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||||||    
T  37093788 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtc 37093738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 27342930 - 27342885
Alignment:
Q  265 gatttagtcctttatgttataaaatgacaatatcttatcatttttt 310  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||    
T  27342930 gatttagtcctttatgttataaaatggcgataccttatcatttttt 27342885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 19850559 - 19850516
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||    
T  19850559 atttagtcctttatgttataaaattacaataccttctcattttt 19850516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 29171609 - 29171494
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||  ||||||||||| |||| | ||||||||||||||||| |||        ||| | ||||| || |||||||||||||||||||    
T  29171609 gcaaaattacacaatttatctcttaacttaatttcacgtaacactttcgtccttcatcttttttt-gtcccaatttattcttttatgttataaaatgaca 29171511  T
Q  294 atatcttatcatttttt 310  Q
    |||| ||| ||||||||    
T  29171510 atattttaacatttttt 29171494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 32458142 - 32458075
Alignment:
Q  184 ataaaattaag-caaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    ||||||||||| ||||||  ||||||||||| |||||||| |||||| |||||| |||| ||||||||    
T  32458142 ataaaattaaggcaaaattacacaattagtcccttaacttaattttaggtaacattttcatcctttat 32458075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 3294654 - 3294584
Alignment:
Q  181 taaataaa-attaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||||| ||||||||||||  || ||||  || |||||||| ||||||||||||||||| |||||||||    
T  3294654 taaataaatattaagcaaaattacaaaatttatcccttaacttaattttaagtaacacttttgtcctttat 3294584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 2318494 - 2318675
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  2318494 gcaaaatagcacaattagtcccttaactttattttaggtaacactttcgtcctttat-ttttttttgtcacgatttagtcctttatgttataaaatgaca 2318592  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2318593 atatcttatcattttttatgagatttttttcaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 2318675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 194 - 377
Target Start/End: Complemental strand, 9320147 - 9319964
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  9320147 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 9320048  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatgc 377  Q
    |||||||||||||||||||||||       ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  9320047 atatcttatcattttttatgagatttttttcaaagaaatttgattttctagacttgtatgatgaagatttacgtttgcctatgc 9319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 18916626 - 18916808
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  18916626 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 18916725  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  18916726 atatcttatcattttttatgagatttttttcaaagaaatttgattttatatgcgtgtatgatgaagatttacgtttgcctatg 18916808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 20364315 - 20364133
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||  |||||||||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  20364315 gcaaaattacacaattagtcctttaactttattttaggtaacactttcgtcctttattttttttttgtcacgatttagtcctttatgttataaaatgaca 20364216  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20364215 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 20364133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 17846009 - 17846189
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  17846009 gcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 17846108  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgccta 374  Q
    |||||||||||||||||||||||       ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  17846109 atatcttatcattttttatgagatttttttcaaagaaatttgattttctagacttgtatgatgaagatttacgtttgccta 17846189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 10044746 - 10044928
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||| |||||||| |||||||||||||||||||    
T  10044746 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacaatttagtcatttatgttataaaatgaca 10044845  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  10044846 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttgcgtttgcctatg 10044928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 44536520 - 44536346
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  44536520 cacaattagtcccttaactttattttaggtaacactttcatcctttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttat 44536421  T
Q  303 cattttttatgaga-nnnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||        |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  44536420 cattttttatgagattttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacatttgcctatg 44536346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 10108814 - 10108997
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||| ||||||         |||||||||||||| ||||||||||||||||||    
T  10108814 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcttttatctttttttttgtcacgatttagtcatttatgttataaaatgac 10108913  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||       ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  10108914 aatatcttatcattttttatgagatttttttcaaagaaatttaattttctaggcttgtatgatgaagatttgcgtttgcctatg 10108997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 203 - 368
Target Start/End: Original strand, 4261163 - 4261328
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||    
T  4261163 cacaattagtcccttaattttattttaggtaacactttcgtcctttatcttttttttgttacgatttagtcctttatgttataaaatgacaatatcttat 4261262  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtt 368  Q
    ||||||||||||||       |||||||||| ||||||||| ||||||||||||||||||| ||||    
T  4261263 cattttttatgagatttttttcaaagaaattagattttctaggcttgtatgatgaagatttgcgtt 4261328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 27360120 - 27360304
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn--gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| ||||||||||||||| |||| | |||||||||||||           ||||| ||||||||||||||||||| ||||||    
T  27360120 gcaaaattacacaattagtcccttaactttattttaggtaatattttcgtcctttatattttttttttgtcacaatttagtcctttatgttattaaatga 27360219  T
Q  292 caatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27360220 caatatcttatcattttttaagagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 27360304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 601328 - 601512
Alignment:
Q  194 gcaaaatagcacaattagtctctt-aactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  |||||||| |||||| |||||||||||| |||||||||||||||||||||         |||||||||||||| |||||  ||||||||||    
T  601328 gcaaaattacacaattaatctctttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcttttataatataaaatga 601427  T
Q  292 caatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||||       ||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||    
T  601428 caatatcttatcattttttatgagatttttttcaaagaaatttgattttatatacttttatgatgaagatttacatttgcctatg 601512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 9319812 - 9319924
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||| ||  |||    
T  9319812 cacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataacaacatagtta 9319911  T
Q  302 tcattttttatga 314  Q
    || ||||||||||    
T  9319912 tccttttttatga 9319924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 8322515 - 8322411
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatcat 305  Q
    |||| ||| |||||||| |||||| |||||| ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  8322515 aattcgtcccttaacttaattttaggtaacattttcgtcctttatcttttttt--tcacgatttagtcctttatgttataaaatgacaatatcttatcat 8322418  T
Q  306 tttttat 312  Q
    |||||||    
T  8322417 tttttat 8322411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 27360466 - 27360345
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| ||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  27360466 gcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 27360367  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  27360366 acatagttatccttttttatga 27360345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 30337425 - 30337607
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||  ||||||| |||||| |||||| ||||||||||||||        || |||||||||||||||||||||||||||||||    
T  30337425 gcaaaattacacaattagtccattaacttaattttaggtaacattttcgtcctttatcttttttttgtaacgatttagtcctttatgttataaaatgaca 30337524  T
Q  294 atatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     ||| ||||||||||| |||||||       ||| |||||||||||||||    | ||||||||||||||| |||||| |||||    
T  30337525 ctattttatcatttttgtatgaga-atttttcaatgaaatttgattttcttgaatagtatgatgaagatttgcgtttgtctatg 30337607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 17846342 - 17846231
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-cttat 302  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||| ||||||||||||| |||| ||  ||||    
T  17846342 acaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctatatgttataaaataacaacatagttat 17846243  T
Q  303 cattttttatga 314  Q
    | ||||||||||    
T  17846242 ccttttttatga 17846231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 18916957 - 18916848
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-cttatca 304  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||        |||||||||||||||||||||||||||||| |||| ||  |||||     
T  18916957 aattagtcccttaactttattttaggtaacactttcgttctttatcttttttttgtcacgatttagtcctttatgttataaaataacaacatagttatcc 18916858  T
Q  305 ttttttatga 314  Q
    ||||||||||    
T  18916857 ttttttatga 18916848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 20363971 - 20364092
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||| ||||||||| |||||| ||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  20363971 gcaaaattacacaattagtcccttaattttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 20364070  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  20364071 acatagttatccttttttatga 20364092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 2318834 - 2318735
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||| ||||||||||||||| |||    
T  2318834 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatc-ttcttttgtcacgatttagtcttttatgttataaaataaca 2318736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 13862503 - 13862615
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||| |||  ||||||| ||||||||||| ||||||||||||||||        ||| ||| |||||||||||||||||||||||||||||| || |    
T  13862503 cacaattcgtcctttaacttaattttaagtaatactttcgtcctttatcttttttt-gtctcgaattagtcctttatgttataaaatgacaatatttttt 13862601  T
Q  303 cattttttatgaga 316  Q
    ||||||| ||||||    
T  13862602 catttttaatgaga 13862615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 4261500 - 4261376
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc---nnnnnnnngtcacgatttagtcctttatgttataaaatg 290  Q
    |||||||  |||||||||||  |||||||||||||| |||||||||||||||||||||           |||||||||||||||| |||||||||||||     
T  4261500 gcaaaattacacaattagtccgttaactttattttaggtaacactttcgtcctttatctttttttttttgtcacgatttagtcctctatgttataaaata 4261401  T
Q  291 acaatat-cttatcattttttatga 314  Q
    |||| ||  ||||||||||||||||    
T  4261400 acaacatagttatcattttttatga 4261376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 37084688 - 37084734
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcatttttt 310  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  37084688 cgatttagtcatttatgttataaaatgacaatatcttatcatttttt 37084734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 10109146 - 10109038
Alignment:
Q  208 ttagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgacaatat-cttatcat 305  Q
    |||||| |||||||||||||||  |||||||||||||||||||          |||||||||||||||||||||||||||||| |||||||  ||||| |    
T  10109146 ttagtcccttaactttattttagttaacactttcgtcctttatatttttttttgtcacgatttagtcctttatgttataaaataacaatatagttatcct 10109047  T
Q  306 tttttatga 314  Q
    |||||||||    
T  10109046 tttttatga 10109038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 9991921 - 9991971
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  9991921 atttagtcctttatattctaaaatgacaatattttatcattttttatgaga 9991971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 601677 - 601620
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  601677 gcaaaattacacaattagtcccttaactttattttaggtaacacttttgtcctttatc 601620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 10520866 - 10520907
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattt 307  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  10520866 atttagtcctttatattataaaatgacaatatcttatcattt 10520907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 43520439 - 43520394
Alignment:
Q  271 gtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||    
T  43520439 gtcctttatgttataaaatgacaatatcttatcaattttaatgaga 43520394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 5547347 - 5547242
Alignment:
Q  271 gtcctttatgttataaaatgacaatatcttatcatt-ttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgttt 369  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||||       ||| ||||||| |||||||| ||| |||||||||||||||  ||||    
T  5547347 gtcctttatgttataaaatgacattattttatcatttttttatgaga-ttttttcaatgaaatttaattttctaggctagtatgatgaagatttgtgttt 5547249  T
Q  370 gcctatg 376  Q
    | |||||    
T  5547248 gtctatg 5547242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 5547386 - 5547339
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  5547386 cacaattagtcccttaacttaattttaggtaacactttcgtcctttat 5547339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 31770057 - 31769961
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagattt 363  Q
    |||||||||| |||||| |||||||||||||| ||||||||||| ||||||       ||| ||||||||| |||||   ||||||||||||||||||    
T  31770057 atttagtcctctatgttttaaaatgacaatattttatcatttttaatgaga-ctttttcaatgaaatttgagtttcttgacttgtatgatgaagattt 31769961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 44536166 - 44536237
Alignment:
Q  181 taaataaaattaag-caaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    ||||||||||| || ||| || ||||||||||||  |||||||||||||| ||||||||| |||||||||||    
T  44536166 taaataaaatttaggcaatattgcacaattagtcctttaactttattttaggtaacacttccgtcctttatc 44536237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 41385817 - 41385779
Alignment:
Q  278 atgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  41385817 atgttataaaatgttaatatcttatcattttttatgaga 41385779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 44769421 - 44769387
Alignment:
Q  275 tttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||||||||||||||||||| |||||||||||||    
T  44769421 tttatgttataaaatgacaatttcttatcattttt 44769387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 40044556 - 40044523
Alignment:
Q  283 ataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||||||||||||| |||||||||||||    
T  40044556 ataaaatgacaatatcttattattttttatgaga 40044523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 18178433 - 18178377
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||||  |||||||||||  |||||||||| ||| |||| |||||||||||||||    
T  18178433 gcaaaattacacaattagtcctttaactttatattaggtaatactttcgtcctttat 18178377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 196 - 376
Target Start/End: Complemental strand, 40902670 - 40902490
Alignment:
Q  196 aaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaat 295  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||        ||||||||||||||||||||||||||| ||||||||    
T  40902670 aaaatagcacaattagtcccttaactttattttaggtaacacttttgtcctttatcttttttttgtcacgatttagtcctttatgttataagatgacaat 40902571  T
Q  296 atcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40902570 atcttatcattttttatgagattattttcaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 40902490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 1549328 - 1549510
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  1549328 gcaaaataacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 1549427  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1549428 atatcttatcattttttatgagattttttttaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 1549510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 376
Target Start/End: Original strand, 2026708 - 2026904
Alignment:
Q  180 ataaataaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttat 279  Q
    ||||| ||||| | |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||    
T  2026708 ataaaaaaaataaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttat 2026807  T
Q  280 gttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  2026808 gttataaaatgacaatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgaagaagatttacgtttgcctatg 2026904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 17985632 - 17985451
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||        ||||||||||| |||||||| |||||||||||||    
T  17985632 gcaaaatagcacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttaatcctttatattataaaatgaca 17985533  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17985532 atatcttatcattttttatgagatttttt-caaagaaatttgattttctatgcttgtatgatgaagatttacgattgcctatg 17985451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 30562785 - 30562966
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||| || ||||||||||||||||||||    
T  30562785 gcaaaataacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttt-gtcacgatttggttctttatgttataaaatgaca 30562883  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30562884 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 30562966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 17611757 - 17611587
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatcat 305  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||||||||||||    
T  17611757 aattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgtcaatatcttatcat 17611658  T
Q  306 tttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||       ||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  17611657 tttttatgagatttttttcaaagaaatttaattttctaggcttgtatgatgaagatttacgtttgcctatg 17611587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 195 - 376
Target Start/End: Complemental strand, 30002552 - 30002372
Alignment:
Q  195 caaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  30002552 caaaataacacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttt-gtcacgatttagtcctttatgttataaaatgacaa 30002454  T
Q  295 tatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||        ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  30002453 tatcttatcattttttatgagattttttttaaagaaatttgattttctaggtttgtatgatgaagatttacgtttgcctatg 30002372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 25780224 - 25780052
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||         |||| ||||||||| ||||||||||||||||||||||||||||    
T  25780224 cacaattagtcccttaactttattttaggtaacactttcgtcctttat-ttttttttgtcatgatttagtcatttatgttataaaatgacaatatcttat 25780126  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  25780125 cattttttatgagatttttttcaaagaaatttgattttctaagcttgtatgatgaagatttacgtttgcatatg 25780052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 12139025 - 12139207
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||||||||| ||||||||| |||| |||||||| ||||||         ||||||||||||||||||||||||||||||||||    
T  12139025 gcaaaattacacaattagtctcttaattttattttaggtaatactttcgttctttattttttttttgtcacgatttagtcctttatgttataaaatgaca 12139124  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||    
T  12139125 atatcttatcattttttatgagatttttttcaaagaaatttaattttctaggcttgtatgatgaagatttgcgtttgcatatg 12139207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 7114207 - 7114026
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||  ||||||||||||||  |||||||||||||||||||         ||||| ||||||||||||||||||||||||||||    
T  7114207 gcaaaattacacaattagtccattaactttattttagataacactttcgtcctttat-ttttttttgtcacaatttagtcctttatgttataaaatgaca 7114109  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||| |||||||||||| || ||||||||||||||||||||||||||||||||    
T  7114108 atatcttatcattttttatgagatttttttcaaataaatttgattttttaggcttgtatgatgaagatttacgtttgcctatg 7114026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 17985297 - 17985388
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| ||||    
T  17985297 cacaattagtctcttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataacaa 17985388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 17611426 - 17611547
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  17611426 gcaaaattacacaattagtcccttaactttattttatgtaacactttcgtcctttatcttttttctgtcacgatttagtcctttatgttataaaataaca 17611525  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  17611526 acatagttatccttttttatga 17611547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 40902328 - 40902428
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  40902328 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttgttgtcacgatttagtcctttatgttataaaataaca 40902427  T
Q  294 a 294  Q
    |    
T  40902428 a 40902428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 2027064 - 2026943
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||| |||||||||||||||||||||||| |||    
T  2027064 gcaaaattacacaattagtcccttaactttattttatgtaacactttcgtcctttatcttttctttgtcacaatttagtcctttatgttataaaataaca 2026965  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  2026964 acatagttatccttttttatga 2026943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 30002221 - 30002333
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||||        |||||||||||||||||||||||||||||| |||| ||  |||    
T  30002221 cacaattagtcccttaactttattttatgtaacacttttgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataacaacatagtta 30002320  T
Q  302 tcattttttatga 314  Q
    || ||||||||||    
T  30002321 tccttttttatga 30002333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 12115024 - 12115136
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatt 362  Q
    |||||||| |||||||||||||||||||| | ||| ||||||||||||||||||       ||| |||||||||||||||| ||| ||||||||||||||    
T  12115024 acgatttaatcctttatgttataaaatgatactattttatcattttttatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaagatt 12115122  T
Q  363 tacgtttgcctatg 376  Q
    | | |||| |||||    
T  12115123 tgcatttgtctatg 12115136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 7113866 - 7113960
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaa 288  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||         |||||||||||||||||||| ||||||||    
T  7113866 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttattttttttttgtcacgatttagtcctttatattataaaa 7113960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 12115301 - 12115196
Alignment:
Q  189 attaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaa 288  Q
    |||| |||||||  ||||||||||| |||||||| |||||| |||||| ||||||||||||||        || ||||||||||||||||||||||||||    
T  12115301 attaggcaaaattacacaattagtcccttaacttaattttaggtaacattttcgtcctttatcttttttttgtaacgatttagtcctttatgttataaaa 12115202  T
Q  289 tgacaa 294  Q
    | ||||    
T  12115201 taacaa 12115196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 376
Target Start/End: Original strand, 4969387 - 4969548
Alignment:
Q  216 ttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgacaatatcttatcattttt-tatg 313  Q
    ||||||| |||||| |||||||||||||||||||||         || |||||||||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  4969387 ttaacttaattttaggtaacactttcgtcctttatctttttttttgtaacgatttagtcctttatgttattaaatgacactattttatcatttttgtatg 4969486  T
Q  314 agannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||       ||| |||||||||||||||   || ||||||||||||||| |||||| |||||    
T  4969487 aga-ttttttcaatgaaatttgattttcttgactagtatgatgaagatttgcgtttgtctatg 4969548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 289
Target Start/End: Complemental strand, 12139369 - 12139273
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaat 289  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||| |||||||||||||    
T  12139369 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctctatgttataaaat 12139273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 376
Target Start/End: Complemental strand, 19897452 - 19897340
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatt 362  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||        || |||||||||||||||| ||| |||||||| |||||    
T  19897452 acgatttaatcctttatgttataaaatgacactattttatcattttttatgagattttttt-aatgaaatttgattttctaggctagtatgatgtagatt 19897354  T
Q  363 tacgtttgcctatg 376  Q
    | | |||| |||||    
T  19897353 tgcatttgtctatg 19897340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 30563128 - 30563027
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||| ||||||| ||||||||||||||| ||||||||||||| |||||||         |||||||||||||||||||||||||||||| ||    
T  30563128 gcaaaattacacgattagtcccttaactttattttaggtaacactttcgttctttatctttttttttgtcacgatttagtcctttatgttataaaataac 30563029  T
Q  293 aa 294  Q
    ||    
T  30563028 aa 30563027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 25779895 - 25780011
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatc----nnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat- 297  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||            ||||||||||||| |||||||||||||||| |||| ||     
T  25779895 cacaattagtcccttaactttattttagataacactttcgtcctttatcttttttttttttgtcacgatttagttctttatgttataaaataacaacata 25779994  T
Q  298 cttatcattttttatga 314  Q
     ||||||||||||||||    
T  25779995 gttatcattttttatga 25780011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 19897187 - 19897277
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    |||||||||| |||||||| |||||| |||||| ||||||||||||||        || ||||||||||||||||||||| ||||| ||||    
T  19897187 acaattagtcccttaacttaattttaggtaacattttcgtcctttatcttttttttgtaacgatttagtcctttatgttaaaaaataacaa 19897277  T

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Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 29233699 - 29233745
Alignment:
Q  205 caattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  29233699 caattggtctcttaactttattttaagtaacactctcgtcctttatc 29233745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 47194003 - 47193951
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||| ||||||    
T  47194003 cgatttagtcttttatgttattaaatgacaatatcttatcttttttaatgaga 47193951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 30306852 - 30306902
Alignment:
Q  265 gatttagtcctttatgttataaaatgacaatatcttatcattttttatgag 315  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||| |||||    
T  30306852 gatttagtcttttatattataaaatgacaatatcttataatttttaatgag 30306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 44066997 - 44066951
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttttat 312  Q
    |||||||| |||||||||||||||| ||||||||||||| |||||||    
T  44066997 atttagtcatttatgttataaaatgtcaatatcttatcaatttttat 44066951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 34480483 - 34480440
Alignment:
Q  208 ttagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||    
T  34480483 ttagtcccttaactttattttaagtaacaatttagtcctttatc 34480440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 9172308 - 9172266
Alignment:
Q  267 tttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||    
T  9172308 tttagccctttaagttctaaaatgacaatatcttatcattttt 9172266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 9180290 - 9180248
Alignment:
Q  267 tttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||    
T  9180290 tttagccctttaagttctaaaatgacaatatcttatcattttt 9180248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 49564186 - 49564243
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||  ||||||| |||||||||||| |||| | |||||||||| ||||||||||    
T  49564186 gcaaaattacacaattcgtctcttaacttaatttcaggtaacacttttgtcctttatc 49564243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 13294603 - 13294786
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  13294603 gcaaaatagcacaattagtcccttaactttattttatgtaacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaatgac 13294702  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13294703 aatatcttatcattttttatgagatttttttcaaagaaatttgattttctatgcttgtatgatgaagatttacatttgcctatg 13294786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 50161452 - 50161279
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  50161452 cacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttat 50161353  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50161352 cattttttatgagatttttttcaaagaaatttgattttatatgcttgtatgatgaagatttacgtttgcctatg 50161279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 196 - 376
Target Start/End: Original strand, 5260197 - 5260376
Alignment:
Q  196 aaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaat 295  Q
    |||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  5260197 aaaatagcacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttt-gtcacgatttagtcctttatgttataaaatgacaat 5260295  T
Q  296 atcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5260296 atcttatcattttttatgagatttttttcaaagaaatttgattttctatgcttgtatgatgaagatttacgtctgcctatg 5260376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 23163624 - 23163442
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  23163624 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 23163525  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  23163524 atatcttatcattttttatgagatttttttcaaagaaatttgattttatatgcttgtataatgaagatttacgtttgcctatg 23163442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 48419561 - 48419379
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  48419561 gcaaaataacacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 48419462  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48419461 atatcttatcattttttatgagatttttttcaaaaaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 48419379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 49621440 - 49621622
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  49621440 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 49621539  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  49621540 atatcttatcattttttatgagatgtttttcaaagaaatttgattttatatgcgtgtatgatgaagatttacgtttgcctatg 49621622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 9526153 - 9525971
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||    
T  9526153 gcaaaataacacaattagtcccttaactttattttaggtaacactttcatcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 9526054  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||        |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  9526053 atatcttatcattttttatgagatttttttaaaagaaatttgattttataagcttgtatgatgaagatttacgtttgcctatg 9525971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 33692263 - 33692445
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  33692263 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 33692362  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  33692363 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttgcatttgcctatg 33692445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 21707947 - 21707765
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||||||||||||||||||| |||| |||||||| |||||||        ||||||||||||||||||||||||| ||||||||    
T  21707947 gcaaaattacacaattagtctcttaactttattttaggtaatactttcgttctttatcttttttttgtcacgatttagtcctttatgttattaaatgaca 21707848  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||| ||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21707847 atatcttatcattttttaagagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 21707765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 28458866 - 28458684
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  28458866 gcaaaattacacaattagtcccttaactttattttaggtaatactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 28458767  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  28458766 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgttgaagatttgcgtttgcctatg 28458684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 21053640 - 21053460
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||| |||||||||        || ||||||||||||||||| |||||||||||||    
T  21053640 gcaaaattacacaattagtcccttaactttattttaggtaacactttcatcctttatcttttttttgttacgatttagtcctttatattataaaatgaca 21053541  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgccta 374  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21053540 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgccta 21053460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 206 - 376
Target Start/End: Original strand, 3546501 - 3546672
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnng-tcacgatttagtcctttatgttataaaatgacaatatcttatca 304  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||    
T  3546501 aattagtcccttaactttattttaggtaacacttttgtcctttatcttttttttggtcacgatttagtcctttatgttataaaatgacaatatcttatca 3546600  T
Q  305 ttttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3546601 ttttttatgagattcttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 3546672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 26202523 - 26202705
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  26202523 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttcttgtcacgatttagtcctttatgttataaaatgaca 26202622  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||| |||||||  ||||||||||||||||||| ||||| ||||||    
T  26202623 atatcttatcattttttatgagatttttttcaaagaaatttaattttcttggcttgtatgatgaagatttgcgtttacctatg 26202705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 42857146 - 42856964
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||| ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||  ||    
T  42857146 gcaaaattacacaattagtcccttaattttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaattgca 42857047  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42857046 atatcttatcattttttatgagatttttttcaaaaaaatttgattttctaagcttgtatgatgaagatttacgtttgcctatg 42856964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 20931322 - 20931139
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||| ||||||  |||||||||||||||  ||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  20931322 gcaaaattacacgattagttccttaactttattttagataacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaatgac 20931223  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||| |       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20931222 aatatcttatcattttttatgatatttttttcaaagaaatttgattttctaagcttgtatgatgaagatttacgtttgcctatg 20931139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 33369510 - 33369695
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn--gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||| ||          |||||||||||||| |||||||||||||||||    
T  33369510 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttttcttttttttttgtcacgatttagtcatttatgttataaaatga 33369609  T
Q  292 caatatcttatcatttttt-atgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||| ||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33369610 caatatcttatcatttttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 33369695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 194 - 368
Target Start/End: Complemental strand, 52690442 - 52690266
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn--gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||          || ||||||||||| |||||||||||||||||    
T  52690442 gcaaaattacacaattagtctcttaactttattttaggtaacactttcgtcctttatctttttttttggttacgatttagtcgtttatgttataaaatga 52690343  T
Q  292 caatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtt 368  Q
    |||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||| ||||    
T  52690342 caatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttgcgtt 52690266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 41689390 - 41689575
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngt--cacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||         |  ||||||||||||||||||||||||||||||    
T  41689390 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttttttcacgatttagtcctttatgttataaaatga 41689489  T
Q  292 caatatcttatcattttttatg-agannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||| |         |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41689490 caatatcttatcattttttatgaatttttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 41689575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 46143615 - 46143434
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||  ||||||||||||||| ||||||||||||||||||||         |||||||||||||||||||| ||||||||||| |    
T  46143615 gcaaaattacacaattagtgccttaactttattttaggtaacactttcgtcctttattttttttttgtcacgatttagtcctttatattataaaatgata 46143516  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||| ||||||||||||||||||       |||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  46143515 atattttatcattttttatgagatttttttcaaagaaatttgattttctaggctt-tatgatgaagatttacgtttgcctatg 46143434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 55140199 - 55140379
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||| |||| || ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||| |||||||||||||    
T  55140199 gcaaaattacacgattaatcccttaactttattttaggtaacactttcgtcctttatcttttttt-gtcacgatttagtcctttattttataaaatgaca 55140297  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||| ||||||||||||    
T  55140298 atatcttatcattttttatgaga-ttttttcaaagaaatttgattttctaggcttgtataatgaagatttgcgtttgcctatg 55140379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 37872768 - 37872944
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn--gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| ||||||||||||||          ||||||||||||||||||||||||||||||||    
T  37872768 gcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttttttgtcacgatttagtcctttatgttataaaatga 37872867  T
Q  292 caatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgccta 374  Q
    |||||||||||||||||||||||||       |      ||||||||||||| ||||||||||||||||||||||||||||||    
T  37872868 caatatcttatcattttttatgagatttttttc------atttgattttctaggcttgtatgatgaagatttacgtttgccta 37872944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 376
Target Start/End: Complemental strand, 23549776 - 23549660
Alignment:
Q  260 gtcacgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaag 359  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||       |||| |||||| |||||||| |||||||||||||||    
T  23549776 gtcacggtttagtcctttatgttataaaatgacaatatctcatcattttttatgagatttttttcaaaaaaatttaattttctaggcttgtatgatgaag 23549677  T
Q  360 atttacgtttgcctatg 376  Q
    |||| ||||||||||||    
T  23549676 atttgcgtttgcctatg 23549660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 33369847 - 33369735
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||| ||  |||    
T  33369847 cacaattagtctcttaactatattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataacaacatagtta 33369748  T
Q  302 tcattttttatga 314  Q
    |||||||||||||    
T  33369747 tcattttttatga 33369735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 23163282 - 23163403
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  23163282 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 23163381  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  23163382 acatagttatccttttttatga 23163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 49621782 - 49621661
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  49621782 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 49621683  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  49621682 acatagttatccttttttatga 49621661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 13294947 - 13294847
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  13294947 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 13294848  T
Q  294 a 294  Q
    |    
T  13294847 a 13294847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 25297681 - 25297865
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc--nnnnnnnngtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||||          || |||||||||||||||||||||||||||||    
T  25297681 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttatcttttttttttgtaacgatttagtcctttatgttataaaatga 25297780  T
Q  292 caatatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||  || ||||||||||| |||||||       ||| ||||| |||||||||| ||| |||||| |||||||| |||||| |||||    
T  25297781 cacaattttatcatttttgtatgaga-ttttttcaatgaaatctgattttctaggctagtatgacgaagatttgcgtttgtctatg 25297865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 20930976 - 20931079
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||| |||||||| ||||||||||||||| |||    
T  20930976 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacaatttagtcttttatgttataaaataaca 20931075  T
Q  294 atat 297  Q
    ||||    
T  20931076 atat 20931079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 2685986 - 2686162
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||| ||| |         || ||||||||||||||||||||||||||||||     
T  2685986 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtctttttt----tttttgtaacgatttagtcctttatgttataaaatgacg 2686081  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     ||| |||||| |||||||||||       ||| |||||||||||||||| ||| ||||||||| ||||| |||||| |||||    
T  2686082 ctattttatca-tttttatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgacgatttgcgtttgtctatg 2686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 30799391 - 30799503
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagat 361  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||       ||| |||||||||||||||| ||| |||||||||| ||    
T  30799391 acgatttagtcctttatgttataaaatgacactattttatcatttttgtatgaga--tttttcaatgaaatttgattttctaggctagtatgatgaatat 30799488  T
Q  362 ttacgtttgcctatg 376  Q
    || |||||| |||||    
T  30799489 ttgcgtttgtctatg 30799503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 42856794 - 42856925
Alignment:
Q  183 aataaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgtt 282  Q
    ||||| |||| |||||||  ||||||||||| ||||| ||||||||| ||||||||||||||||||||         |||||||||||||| ||||||||    
T  42856794 aataatattaggcaaaattacacaattagtcccttaattttattttaggtaacactttcgtcctttat-tttttttggtcacgatttagtcttttatgtt 42856892  T
Q  283 ataaaatgacaatat-cttatcattttttatga 314  Q
    ||||||| |||| ||  ||||||||||||||||    
T  42856893 ataaaataacaacatagttatcattttttatga 42856925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 55742739 - 55742791
Alignment:
Q  324 caaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55742739 caaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 55742791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 9525806 - 9525930
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcc---tttatcnnnnnnnngtcacgatttagtcctttatgttataaaatg 290  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||   ||||||        |||||||||||||| |||||||||||||||     
T  9525806 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtccttttttatcttttttttgtcacgatttagtcatttatgttataaaata 9525905  T
Q  291 acaatat-cttatcattttttatga 314  Q
    |||| ||  ||||||||||||||||    
T  9525906 acaacatagttatcattttttatga 9525930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 50161125 - 50161218
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatc--nnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||||| ||||    
T  50161125 cacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttttgtcacgatttagtcctttatgttataaaataacaa 50161218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 28458531 - 28458644
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgacaatat-ctt 300  Q
    ||||||||||| |||||| |||||||| ||||||||| |||||||||||         |||||||||||||||||||||||||||||| |||||||  ||    
T  28458531 cacaattagtcccttaacattattttaggtaacacttccgtcctttatctttttttttgtcacgatttagtcctttatgttataaaataacaatatagtt 28458630  T
Q  301 atcattttttatga 314  Q
    ||| ||||||||||    
T  28458631 atccttttttatga 28458644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 37873095 - 37872986
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa-tatcttatca 304  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||        |||||||||||||| ||||||||||||||| ||||  |  ||||||    
T  37873095 aattagtcccttaactttattttatgcaacactttcgtcctttatcttttttttgtcacgatttagtcatttatgttataaaataacaacaaagttatca 37872996  T
Q  305 ttttttatga 314  Q
    ||||||||||    
T  37872995 ttttttatga 37872986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 46143273 - 46143394
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||| ||||||||| |||||| ||||||||||||||        ||||| |||||||||||||||||||||||| |||    
T  46143273 gcaaaattacacaattagtcccttaattttattttaggtaacattttcgtcctttatcttttttttgtcacaatttagtcctttatgttataaaataaca 46143372  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  46143373 acatagttatccttttttatga 46143394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 3546835 - 3546712
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc--nnnnnnnngtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  |||||||||| |||||||||||||||| |||||||||||||| ||||||          ||||| |||||||||||||||||||||||| |    
T  3546835 gcaaaattacacaattagtttcttaactttattttaggtaacactttcgtcatttatcttttttttttgtcacaatttagtcctttatgttataaaataa 3546736  T
Q  292 caatat-cttatcattttttatga 314  Q
    ||| ||  ||||||||||||||||    
T  3546735 caacatagttatcattttttatga 3546712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 30055209 - 30055393
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn--gtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||| |||||||||           || |||||||||||||||||||||||||||||    
T  30055209 gcaaaattacacaattagtcccttaacttaattttaggtaacacttttgtcctttattttatttttttgtaacgatttagtcctttatgttataaaatga 30055308  T
Q  292 caatatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    || ||| ||||||||||| |||||||       |||  ||||||||||||||   || ||||||| ||||||| ||||||||||||    
T  30055309 cactattttatcatttttgtatgaga-ttttttcaataaaatttgattttcttgactagtatgataaagatttgcgtttgcctatg 30055393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 50977723 - 50977627
Alignment:
Q  267 tttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagattt 363  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||       ||| | ||| ||||||| || | |||||||||||||||||    
T  50977723 tttagtcctttatattataaaatgacaatatcgtatcattttttatgagatttttttcaatggaatatgattttttaggtttgtatgatgaagattt 50977627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 55742952 - 55742831
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||  ||||||||||||||  |||||||||||||||||||         |||||||||||||||| ||||||||||||| |||    
T  55742952 gcaaaattacacaattagtcctttaactttattttagataacactttcgtcctttattttttttttgtcacgatttagtcctctatgttataaaataaca 55742853  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  55742852 acatagttatccttttttatga 55742831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 33692606 - 33692486
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||| ||||||||| |||||||||||||| ||||||        |||||||||||||||| ||||||||||||| |||    
T  33692606 gcaaaattacacaattagtcccttaattttattttaggtaacactttcgtcatttatc-tttttttgtcacgatttagtcctctatgttataaaataaca 33692508  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  33692507 acatagttatccttttttatga 33692486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 52690097 - 52690217
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||| | ||||||||||||||        |||||||||||||||| ||||||||||||| |||    
T  52690097 gcaaaattacacaattagtcgcttaactttattttaggtaatattttcgtcctttatc-tttttttgtcacgatttagtcctctatgttataaaataaca 52690195  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  52690196 acatagttatccttttttatga 52690217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 22335505 - 22335602
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagattt 363  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||  ||       ||| ||||| |||||||||| | |||||||||||||||||    
T  22335505 cgatttattcctttacgttataaaatgacaatatcttctcattttttat--gaattttttcaatgaaatctgattttctaggtttgtatgatgaagattt 22335602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 5260525 - 5260437
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||        |||| |||||| || ||||||||||||||| ||||    
T  5260525 aattagtcttttaactttattttaggtaacattttcgtcctttatctttgttttgtcatgatttaatcatttatgttataaaataacaa 5260437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 21707616 - 21707724
Alignment:
Q  206 aattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-cttatca 304  Q
    ||||||||||||||||||||||||||||| | ||||||  ||||||        |||||||||||||| ||||||||||||||| |||| ||  |||||     
T  21707616 aattagtctcttaactttattttaagtaatattttcgttttttatc-tttttttgtcacgatttagtcatttatgttataaaataacaacatagttatcc 21707714  T
Q  305 ttttttatga 314  Q
    ||||||||||    
T  21707715 ttttttatga 21707724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 30799302 - 30799350
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||||    
T  30799302 cacaattagtcccttaacttaattttaggtaacactttcgtcctttatc 30799350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 41689727 - 41689615
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||| | |||||||||||||||||||| | ||||||||||||||        || || |||| ||||||||||||||||||| |||| ||  |||    
T  41689727 cacaattagccccttaactttattttaagtaatattttcgtcctttatcttttttttgttacaattttgtcctttatgttataaaataacaacatagtta 41689628  T
Q  302 tcattttttatga 314  Q
    || ||||||||||    
T  41689627 tccttttttatga 41689615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 53232372 - 53232328
Alignment:
Q  265 gatttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||    
T  53232372 gatttagtcctttatattataaaatgacaatatcttattattttt 53232328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 30799670 - 30799611
Alignment:
Q  192 aagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||||  ||||||||||| |||||||| |||||| |||||| ||||||||||||||    
T  30799670 aagcaaaattacacaattagtcccttaacttaattttaggtaacattttcgtcctttatc 30799611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 55742622 - 55742723
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| |||||||| |||||          ||||||||||||||||||| ||||||||||||    
T  55742622 gcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcc-ttatctttttttttatcacgatttagtcctttatattataaaatgac 55742720  T
Q  293 aat 295  Q
    |||    
T  55742721 aat 55742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 17872388 - 17872440
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    ||||| ||||||||||| ||||||||||||| | ||||||| |||||||||||    
T  17872388 cgattgagtcctttatgctataaaatgacaacaccttatcaatttttatgaga 17872440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 55140541 - 55140485
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||||  |||||||| ||  ||||||||||||||||||| |||||||||||||||    
T  55140541 gcaaaattacacaattaatcctttaactttattttaagtaatactttcgtcctttat 55140485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 21053365 - 21053420
Alignment:
Q  260 gtcacgatttagtcctttatgttataaaatgacaata-tcttatcattttttatga 314  Q
    |||||||||||||||||||||||||||||| |||| |   ||||||||||||||||    
T  21053365 gtcacgatttagtcctttatgttataaaataacaacacagttatcattttttatga 21053420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 25298016 - 25297969
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    ||||||||||| |||||||| ||||||||||||| |||| ||||||||    
T  25298016 cacaattagtcccttaacttaattttaagtaacattttcatcctttat 25297969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 9851953 - 9851907
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||| |||||||||||| ||||||||||||| ||||||| |||||    
T  9851953 acaattcgtctcttaacttaattttaagtaacattttcgtcatttat 9851907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 30055548 - 30055494
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtccttt 248  Q
    |||||||  ||||||||||| |||||||| |||||| |||||| |||||||||||    
T  30055548 gcaaaattacacaattagtcccttaacttaattttaggtaacattttcgtccttt 30055494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 563765 - 563721
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||    
T  563765 cgatttagtcctttgtgttataaaatg-caatatcttgtcattttt 563721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 43914676 - 43914640
Alignment:
Q  265 gatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  43914676 gatttagtc-tttatgttataaaatgacaatatcttat 43914640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 8852150 - 8851967
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  8852150 gcaaaatagcacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaatgac 8852051  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8852050 aatatcttatcattttttatgagatttttttcaaagaaatttgattttctatgcttgtttgatgaagatttacgtttgcctatg 8851967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 22316721 - 22316901
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  22316721 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 22316820  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgccta 374  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22316821 atatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgccta 22316901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 37513092 - 37513274
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||        ||||||||||||||||||||||||||||||||||    
T  37513092 gcaaaataacacaattagtcccttaactttattttaggtaacacttttgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 37513191  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  37513192 atatcttatcattttttatgagattttttttaaagaaatttgattttctaggcttgtatgatgaagatttacatttgcctatg 37513274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 203 - 376
Target Start/End: Original strand, 36229773 - 36229946
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  36229773 cacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttat 36229872  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||       ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  36229873 cattttttatgagatttttttcaaagaaatttgattttatatgcgtgtatgatgaagatttacgtttgcttatg 36229946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 55009100 - 55009280
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  55009100 gcaaaatagcacaattagtct-ttaactttattttaggtaacactttcgtcctttatcttttttt-gtcacgatttagtcctttatgttataaaataaca 55009197  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55009198 atatctaatcattttttatgagatttttttcaaagaaatttgattttctatgcttgtatgatgaagatttacgtttacctatg 55009280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 217 - 376
Target Start/End: Original strand, 49621002 - 49621161
Alignment:
Q  217 taactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    ||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49621002 taactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatctcatcattttttatgaga 49621101  T
Q  317 nnnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49621102 tttttttcaaagaaatttgattttatatgcttgtatgatgaagatttacgtttgcctatg 49621161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 22975346 - 22975526
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| ||| ||| ||||||        ||||||||||||||||||||||||||||||||||    
T  22975346 gcaaaattacacaattagtcccttaactttattttaggtaacatttttgtcatttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 22975445  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgccta 374  Q
    ||||||||| |||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22975446 atatcttattattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgccta 22975526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 25847456 - 25847628
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatc 303  Q
    |||||||||| ||||| ||||||||| ||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  25847456 acaattagtcccttaattttattttaggtaacactttcgttctttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttatc 25847555  T
Q  304 attttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||       ||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  25847556 attttttatgagatttttttcaaagaaatttgattctatatgcgtgtatgatgaagatttacgtttgcctatg 25847628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 215 - 373
Target Start/End: Complemental strand, 49985034 - 49984876
Alignment:
Q  215 cttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatcattttttatga 314  Q
    ||||||||||||||| |||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49985034 cttaactttattttaggtaacactttcgtcttttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttatcattttttatga 49984935  T
Q  315 gannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcct 373  Q
    ||       |||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  49984934 gatttttttcaaagaaatttgattttctaagtttgtatgatgaatatttacgtttgcct 49984876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 28829754 - 28829935
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||   |||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  28829754 gcaaaattacacaattagttctttaactttattttaggtaacactttcgtcctttatcttttttt-gtcacgatttagtcctttatgttataaaatgaca 28829852  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||| |||||||| ||||||||||||||||||| ||||| ||||||    
T  28829853 atatcttatcattttttatgagatttttttcaaagaaatttaattttctaagcttgtatgatgaagatttgcgtttacctatg 28829935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 193 - 376
Target Start/End: Complemental strand, 48434148 - 48433965
Alignment:
Q  193 agcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatga 291  Q
    ||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  48434148 agcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatatatttttttgtcacgatttagtcctttatgttataaaatga 48434049  T
Q  292 caatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||| |||||||||||||||||||       |||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  48434048 caatagcttatcattttttatgaga-ttttttcaaagaaatttgattttctaggtttgtatgatgaagatttgcgtttgcctatg 48433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 23043534 - 23043352
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  |||||||||||  |||||||||||||| |||||| |||||||||||||          |||||||||||||||||||||||||||||||||    
T  23043534 gcaaaattacacaattagtcctttaactttattttaggtaacattttcgtcctttatttatttttttgtcacgatttagtcctttatgttataaaatgac 23043435  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  23043434 aatatcttatcattttttatgaga-ttttttcaaagaaatttgattttctaggcttgtatgatgaaggtttgcgtttgcctatg 23043352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 11121284 - 11121459
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctt--tatcnnnnnnnngtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||||||  |||         |||||| |||||||||  ||||||||||||||    
T  11121284 gcaaaatagcacaattagtcccttaactttattttaggcaacactttcgtcctttatattttttttttgtcacggtttagtcctaaatgttataaaatga 11121383  T
Q  292 caatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgttt 369  Q
    ||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  11121384 caatatcttatcaatttttatgagatttttg--aaagaaatttgattttctatgcttgtatgatgaagatttacgttt 11121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 9296650 - 9296547
Alignment:
Q  270 agtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgttt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| || ||||||||||||||||||||||    
T  9296650 agtcctttatgttataaaatgacaatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcatgtatgatgaagatttacgttt 9296551  T
Q  370 gcct 373  Q
    ||||    
T  9296550 gcct 9296547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 376
Target Start/End: Complemental strand, 49711747 - 49711562
Alignment:
Q  190 ttaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaat 289  Q
    |||||||||||  || |||||||| ||||||||||||||| ||||||||||||||| ||||         ||||| |||||||||||| ||||||||| |    
T  49711747 ttaagcaaaattacataattagtcccttaactttattttaggtaacactttcgtccgttat-ttttttttgtcacaatttagtcctttttgttataaa-t 49711650  T
Q  290 gacaatatcttatcattttttatgagannnnnnnc-aaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||||||         |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  49711649 gacaatatcttatcattttttatgagatttttttttaaagaaatttgattttttaggcttgtatgatgaagatttacgtttgcctatg 49711562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 376
Target Start/End: Original strand, 44506056 - 44506229
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    |||||||| || |||||||| |||||| |||||||||||||||||||||        || ||||||||||||||||||||||||||||||| ||| ||||    
T  44506056 cacaattaatcccttaacttaattttaggtaacactttcgtcctttatcttttttttgtaacgatttagtcctttatgttataaaatgacactattttat 44506155  T
Q  303 cattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||| |||||||       ||| |||||||||||||||| ||| |||||||||||||||  ||||| |||||    
T  44506156 catttttgtatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaagatttgtgtttgtctatg 44506229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 8851797 - 8851905
Alignment:
Q  186 aaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttata 285  Q
    ||||||| |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||    
T  8851797 aaaattaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttata 8851896  T
Q  286 aaatgacaa 294  Q
    |||| ||||    
T  8851897 aaataacaa 8851905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 25847789 - 25847668
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||| ||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  25847789 gcaaaattacacaattagtcccttaattttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 25847690  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||||||||||||||    
T  25847689 acatagttatcattttttatga 25847668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 289
Target Start/End: Complemental strand, 37513435 - 37513340
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaat 289  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  37513435 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaat 37513340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 17574374 - 17574553
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||| |||  ||||||| |||||| ||||||||||||||||||||         || ||||||||||||||||||||||||||| |||    
T  17574374 gcaaaattacacaattcgtccattaacttaattttaggtaacactttcgtcctttat-ttttttttgttacgatttagtcctttatgttataaaattaca 17574472  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||| ||||||||||||||||||       ||| | ||||||||||| || |||| ||||||||| |||| |||||| |||||    
T  17574473 atattttatcattttttatgaga--tttttcaatgcaatttgattttttaggcttttatgatgaaaatttgcgtttgtctatg 17574553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 22317064 - 22316964
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||| ||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  22317064 gcaaaattacacgattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 22316965  T
Q  294 a 294  Q
    |    
T  22316964 a 22316964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 11121635 - 11121526
Alignment:
Q  186 aaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttat 284  Q
    |||||||  ||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||    
T  11121635 aaaattagacaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttat 11121536  T
Q  285 aaaatgacaa 294  Q
    ||||| ||||    
T  11121535 aaaataacaa 11121526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 49621323 - 49621202
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||| ||||||        |||||||||||||||||||| ||||||||| |||    
T  49621323 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcttttatcttttttttgtcacgatttagtcctttatattataaaataaca 49621224  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  49621223 acatagttatccttttttatga 49621202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 22975680 - 22975589
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||         || ||||||||||||||||||||||||||| ||||    
T  22975680 cacaattagtcccttaactttattttaggtaacactttcgtcctttattttttttttgttacgatttagtcctttatgttataaaataacaa 22975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 33491749 - 33491692
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33491749 gcaaaattacacaattagtctcttaactttattttaggtaacactttcgtcctttatc 33491692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 55009434 - 55009321
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctt 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| |||| |||| ||  ||    
T  55009434 cacaattagtcccttaactttattttaagtaacactttcgtcctttatctttttttttatcacgatttagtcctttatgttatcaaataacaacatagtt 55009335  T
Q  301 atcattttttatga 314  Q
    ||||||||| ||||    
T  55009334 atcatttttcatga 55009321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 36230099 - 36230007
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||| ||||    
T  36230099 cacaattaatcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaataacaa 36230007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 376
Target Start/End: Complemental strand, 3612870 - 3612759
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcatttttt--atgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagattt 363  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||  ||||||       ||| |||||||||||||||| ||| |||||||||||||||    
T  3612870 atttagtcctttatgttataaaatgaaactattttatcattttttttatgagatttttt-caatgaaatttgattttctaggctagtatgatgaagattt 3612772  T
Q  364 acgtttgcctatg 376  Q
     |||||| |||||    
T  3612771 gcgtttgtctatg 3612759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 28830097 - 28829975
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc-nnnnnnnngtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||||||||||| |||||||||||||||  ||||||||||||||||||||         |||||||||||||||| ||||||||||||| ||    
T  28830097 gcaaaattacacaattagtcccttaactttattttagctaacactttcgtcctttatctttttttttgtcacgatttagtcctctatgttataaaataac 28829998  T
Q  293 aatat-cttatcattttttatga 314  Q
    || ||  ||||| ||||||||||    
T  28829997 aacatagttatccttttttatga 28829975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 49711397 - 49711522
Alignment:
Q  189 attaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaa 288  Q
    |||| |||||||  ||||||||||| ||||||||||||||| ||||||||| |||||||||||         ||||||||||||| ||||||||||||||    
T  49711397 attaggcaaaattacacaattagtcccttaactttattttaggtaacacttacgtcctttatcttttttta-tcacgatttagtcatttatgttataaaa 49711495  T
Q  289 tgacaatat-cttatcattttttatga 314  Q
    | |||| ||  ||||||||||| ||||    
T  49711496 taacaacatagttatcatttttaatga 49711522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 48433810 - 48433922
Alignment:
Q  205 caattagtctcttaactttattttaagtaacactttcgtcctttatc--nnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||          |||||||||||||||| ||||||||||||| |||| ||  |||    
T  48433810 caattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttttgtcacgatttagtcctctatgttataaaataacaacatagtta 48433909  T
Q  302 tcattttttatga 314  Q
    || ||||||||||    
T  48433910 tccttttttatga 48433922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 9296393 - 9296504
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-ctta 301  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||         |||||||||||||| | ||||||||||||| |||| ||  |||    
T  9296393 cacaattagtcccttaactttattttaggtaacactttcgtcctttat-ttttttttgtcacgatttagtcatctatgttataaaataacaacatagtta 9296491  T
Q  302 tcattttttatga 314  Q
    || ||||||||||    
T  9296492 tccttttttatga 9296504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 35850924 - 35850872
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  35850924 cgatttagtcttttatgttataaaatgacaataccttatcactttttatgaga 35850872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 1341957 - 1342002
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  1341957 cgatttattcctttatgttttaaaatgacaatatcttatcattttt 1342002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 12012782 - 12012831
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttttatgag 315  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||||    
T  12012782 atttagtcttttatgttataaaatgtcaatattttatcattttttatgag 12012831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 44506388 - 44506288
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||| || |||||||| |||||| |||||| |||||||||||||         || ||||||||||||||||||||||||||| |||    
T  44506388 gcaaaattacacaattaatcccttaacttaattttaggtaacattttcgtcctttattatttttttgtaacgatttagtcctttatgttataaaataaca 44506289  T
Q  294 a 294  Q
    |    
T  44506288 a 44506288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 43007029 - 43006987
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcatttt 308  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  43007029 atttagttttttatgttataaaatgacaatatcttatcatttt 43006987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 33491603 - 33491660
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||  ||||||||||  ||||||||||||||| |||||| ||||||||||||||    
T  33491603 gcaaaatgacacaattagttccttaactttattttaggtaacagtttcgtcctttatc 33491660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 3612605 - 3612697
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtccttta-tcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaa 294  Q
    ||||||||||| |||||||| |||||| |||||| |||||||||||| |         || ||||||||||||||||||||||||||| ||||    
T  3612605 cacaattagtcccttaacttaattttaggtaacattttcgtcctttatttttttttttgtaacgatttagtcctttatgttataaaataacaa 3612697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 7603660 - 7603616
Alignment:
Q  272 tcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||    
T  7603660 tcctttatattataaaatgtcaatatcttatcatattttatgaga 7603616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 10687928 - 10687880
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    ||||||| |||||||||||| |||||| ||||||||||| |||||||||    
T  10687928 cacaattcgtctcttaacttaattttaggtaacactttcatcctttatc 10687880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 34333730 - 34333775
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||||| || |||||||||||||||| ||||||| ||||||||||    
T  34333730 cgatttaatcttttatgttataaaatgtcaatatcatatcattttt 34333775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 1342216 - 1342180
Alignment:
Q  215 cttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||| || |||||||||||||||||||||||||    
T  1342216 cttaacttaatattaagtaacactttcgtcctttatc 1342180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 7603719 - 7603683
Alignment:
Q  215 cttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  7603719 cttaacttaattttaagtaacacttttgtcctttatc 7603683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 23043193 - 23043241
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    |||||| |||| | |||||||| |||| |||||||||||||||||||||    
T  23043193 cacaataagtcccataactttactttaggtaacactttcgtcctttatc 23043241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 376
Target Start/End: Complemental strand, 3218499 - 3218304
Alignment:
Q  180 ataaataaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttat 279  Q
    |||||||||| || |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||    
T  3218499 ataaataaaaataggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttat 3218400  T
Q  280 gttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||||| ||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3218399 gttataaaatgacaatatcttatcat-ttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 3218304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 3922883 - 3922701
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  3922883 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 3922784  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  3922783 atatcttatcattttttatgagatgtttttcaaagaaatttgattttatatgcgtgtatgatgaaaatttacgtttgcctatg 3922701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 192 - 376
Target Start/End: Original strand, 33595318 - 33595502
Alignment:
Q  192 aagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||||  ||||||||||| ||||||||||||||| |||||| |||||| |||||||        ||||||||||||||||||||||||||||||||    
T  33595318 aagcaaaattacacaattagtcccttaactttattttaggtaacattttcgttctttatcttttttttgtcacgatttagtcctttatgttataaaatga 33595417  T
Q  292 caatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  33595418 caatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttatgtttgcctatg 33595502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 4242924 - 4243106
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||||||  |||| ||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  4242924 gcaaaattacacaattagtcctttaattttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 4243023  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  4243024 atatcttatcattttttatgagatttttttcaaagaaatttgattttctagatttgtatgatgaagatttacgtttgcctatg 4243106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 190 - 371
Target Start/End: Original strand, 14763315 - 14763496
Alignment:
Q  190 ttaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaat 289  Q
    |||||||||||   ||||| |||| ||||||||||||||| ||||||||||||| |||||||        |||||| |||||||||||||||||||||||    
T  14763315 ttaagcaaaattatacaatcagtcccttaactttattttaggtaacactttcgtactttatcttttttttgtcacggtttagtcctttatgttataaaat 14763414  T
Q  290 gacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgc 371  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||||||    
T  14763415 gacaatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgc 14763496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 23069040 - 23068860
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||||        |||||||||||||| |||||||||||||||||||    
T  23069040 gcaaaattacacaattagtctcttaactttattttaggtaacactttcgtcatttatcttttttt-gtcacgatttagtc-tttatgttataaaatgaca 23068943  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       ||||||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  23068942 atatcttatcattttttatgagatttttttcaaagaaatttgattttatatgcgtgtatgatgaagatttacgttttcctatg 23068860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 6754984 - 6755100
Alignment:
Q  260 gtcacgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaag 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||    
T  6754984 gtcacgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaag 6755083  T
Q  360 atttacgtttgcctatg 376  Q
    |||||||||||||||||    
T  6755084 atttacgtttgcctatg 6755100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 23068697 - 23068818
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  23068697 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 23068796  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  23068797 acatagttatccttttttatga 23068818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 33595664 - 33595543
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  33595664 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 33595565  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  33595564 acatagttatccttttttatga 33595543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 3218151 - 3218273
Alignment:
Q  193 agcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgac 292  Q
    ||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||         |||||||||||||||||||||||||||||| ||    
T  3218151 agcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttattttttttttgtcacgatttagtcctttatgttataaaataac 3218250  T
Q  293 aatat-cttatcattttttatga 314  Q
    || ||  ||||| ||||||||||    
T  3218251 aacatagttatccttttttatga 3218273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 4243267 - 4243146
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||| ||||||||||        |||||||||||||||||||||||||||||| |||    
T  4243267 gcaaaattacacaattagtcccttaactttattttaggtaacacttttgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 4243168  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  4243167 acatagttatccttttttatga 4243146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 6755261 - 6755140
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||||| |||||||        |||||||||||||||||||||||||||||| |||    
T  6755261 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgttctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 6755162  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  6755161 acatagttatccttttttatga 6755140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 3922540 - 3922634
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaa 288  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||| |||||||||||||||||||||    
T  3922540 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgaattagtcctttatgttataaaa 3922634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 370
Target Start/End: Complemental strand, 10810328 - 10810145
Alignment:
Q  186 aaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttata 285  Q
    ||||||| |||||||  |||||||||||  |||| || |||||| |||||||| | ||||||||||        ||||  |||||||| |||||| ||||    
T  10810328 aaaattaggcaaaattacacaattagtcctttaatttaattttaggtaacactcttgtcctttatcttttttttgtcattatttagtcttttatgatata 10810229  T
Q  286 aaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttg 370  Q
    |||||||||||| |||| |||||||||||||       ||| |||||||||||||||| | ||||| ||| ||||||| ||||||    
T  10810228 aaatgacaatattttattattttttatgaga-ttttttcaatgaaatttgattttctagggttgtacgataaagatttgcgtttg 10810145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 14763652 - 14763550
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc--nnnnnnnngtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| ||||||||||||||| |||| ||||||||||||||||          |||||||||||||||||| ||||||||||| |    
T  14763652 gcaaaattacacaattagtcccttaactttattttaggtaagactttcgtcctttatcttttttttttgtcacgatttagtcctttttgttataaaataa 14763553  T
Q  292 caa 294  Q
    |||    
T  14763552 caa 14763550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 20491766 - 20491722
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcatttt 308  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  20491766 cgatttaatcatttatgttataaaatgacaatatcttatcatttt 20491722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 11000096 - 11000055
Alignment:
Q  268 ttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    ||||| |||||| |||||||||| ||||||||||||||||||    
T  11000096 ttagttctttatattataaaatggcaatatcttatcattttt 11000055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 185 - 376
Target Start/End: Complemental strand, 30904713 - 30904523
Alignment:
Q  185 taaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttat 284  Q
    |||||||  |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||    
T  30904713 taaaatttggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttt-gtcacgatttagtcctttatgttat 30904615  T
Q  285 aaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30904614 aaaatgacaatatcttatcattttttatgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 30904523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 2967871 - 2968054
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||    
T  2967871 gcaaaatagcacaattagtcccttaactttattttaggtaacactttcgtcatttatcttatttttgtcacgatttagtcctttatgttataaaatgaca 2967970  T
Q  294 atatcttatca-ttttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||| ||||||||||||       ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  2967971 atatcttatcatttttttatgagatttttttcaaagaaatttgattttctatgcttctatgatgaagatttatgtttgcctatg 2968054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 27912096 - 27912279
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||| ||    
T  27912096 gcaaaatagcacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaattac 27912195  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27912196 aatatcttatcattttttatgagattttttttaaagaaatttgattttctatgcttgtttgatgaagatttacgtttgcctatg 27912279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 27958515 - 27958698
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||| ||    
T  27958515 gcaaaatagcacaattagtcccttaactttattttaggtaacactttcgtcctttatctttttttttgtcacgatttagtcctttatgttataaaattac 27958614  T
Q  293 aatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27958615 aatatcttatcattttttatgagattttttttaaagaaatttgattttctatgcttgtttgatgaagatttacgtttgcctatg 27958698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 35482703 - 35482885
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  35482703 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgaca 35482802  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||||||||||||       |||||||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  35482803 atatcttatcattttttatgagatgtttttcaaagaaattcgattttatatgcgtgtatgatgaagatttacgtttgcctatg 35482885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 203 - 376
Target Start/End: Original strand, 17875778 - 17875951
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  17875778 cacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaatgacaatatcttat 17875877  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||       ||||||||||| ||||||||  |||||||||||||||||| | ||||||||||    
T  17875878 cattttttatgagatttttttcaaagaaatttaattttctagacttgtatgatgaagatttgcatttgcctatg 17875951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 10682396 - 10682222
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgacaatatctta 301  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  10682396 cacaattagtcccttaactttattttaggaaacactttcgtcctttatttttttttttgtcacgatttagtcctttatgttataaaatgacaatatctta 10682297  T
Q  302 tcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||| |||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10682296 tcattttttgtgagatttttttcaaagaaatttgattttctaggcttgtatgatgaagatttacgtttgcctatg 10682222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 17844216 - 17844045
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||| ||||    
T  17844216 cacaattagtcccttaacttaattttaggtaacactttcgtcctttatttattttttgtcacgatttagtc-tttatgttataaaatgacaatattttat 17844118  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||| ||||||||       ||| ||||||||||||| || ||||||||||||||||||| |||||| |||||    
T  17844117 catttcttatgaga-ttttttcaatgaaatttgattttataggcttgtatgatgaagatttgcgtttgtctatg 17844045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 44379523 - 44379705
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||| || |||||||| |||||| |||||||||||||||||||||        || |||||||||||||||||||||||||||||||    
T  44379523 gcaaaattacacaattaatcccttaacttaattttaggtaacactttcgtcctttatcttttttttgtaacgatttagtcctttatgttataaaatgaca 44379622  T
Q  294 atatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
     ||| ||||||||||| |||||||       ||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  44379623 ctattttatcatttttgtatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaagatttgcgtttgtctatg 44379705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 370
Target Start/End: Complemental strand, 23792924 - 23792749
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||| ||||||||||| |||||||| |||||| |||||||||| ||||||||||        || |||||||||||||||||||||||||||||||    
T  23792924 gcaaaataacacaattagtcccttaacttaattttaggtaacacttttgtcctttatcttttttt-gtaacgatttagtcctttatgttataaaatgaca 23792826  T
Q  294 atatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttg 370  Q
     ||| ||||||||||| |||||||       ||| |||||||||||||||  ||| ||||||||||||||| ||||||    
T  23792825 ttattttatcatttttgtatgaga-ttttttcaatgaaatttgattttcttggctagtatgatgaagatttgcgtttg 23792749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 20223176 - 20223288
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatt 362  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||       ||| |||||||||||||||| ||| ||||||||||||||    
T  20223176 acgatttagtcctttatattataaaatgacactattttatcattttttatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaagatt 20223274  T
Q  363 tacgtttgcctatg 376  Q
    |||||||| |||||    
T  20223275 tacgtttgtctatg 20223288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 2968214 - 2968093
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  2968214 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 2968115  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  2968114 acatagttatccttttttatga 2968093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 376
Target Start/End: Complemental strand, 13327598 - 13327425
Alignment:
Q  205 caattagtctcttaac--tttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttat 302  Q
    ||||||||| ||||||  || |||||| |||||||||||||| ||||||        ||||||||||| ||||||||| |||||||||| ||||| ||||    
T  13327598 caattagtcccttaacaattaattttaggtaacactttcgtcttttatcttttttttgtcacgatttaatcctttatgatataaaatgataatattttat 13327499  T
Q  303 cattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||||||       |||  ||||||||||| ||| ||||||||||||||||||| | |||| |||||    
T  13327498 cattttttatgagatttttttcaataaaatttgatttgctaggcttgtatgatgaagatttgcatttgtctatg 13327425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 27912450 - 27912342
Alignment:
Q  186 aaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttata 285  Q
    ||||||| |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||| |||||||||||    
T  27912450 aaaattaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcatttatgttata 27912351  T
Q  286 aaatgacaa 294  Q
    |||| ||||    
T  27912350 aaataacaa 27912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 27958869 - 27958761
Alignment:
Q  186 aaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttata 285  Q
    ||||||| |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||| |||||||||||    
T  27958869 aaaattaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcatttatgttata 27958770  T
Q  286 aaatgacaa 294  Q
    |||| ||||    
T  27958769 aaataacaa 27958761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 30928657 - 30928476
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc---nnnnnnnngtcacgatttagtcctttatgttataaaatg 290  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||||           || ||||||||||||||||||||||||||||    
T  30928657 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttatctttttttttttgtaacgatttagtcctttatgttataaaatg 30928558  T
Q  291 acaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||| ||| ||||||   |||||||||       ||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  30928557 acactattttatca---tttatgaga-ttttttcaatgaaatttgattttctaggctggtatgatgaagatttgcgtttgtctatg 30928476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 3691583 - 3691766
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnn-gtcacgatttagtcctttatgttataaaatgac 292  Q
    |||||||  ||||||||||| |||||| | |||||| |||||||||||||||||||||         || ||||||||||||||||||||||||||||||    
T  3691583 gcaaaattacacaattagtcccttaacataattttaggtaacactttcgtcctttatctttttttttgtaacgatttagtcctttatgttataaaatgac 3691682  T
Q  293 aatatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    | ||| ||||||||||| |||||||       ||| ||||||| |||||||| ||| |||||||||||||||  ||||| |||||    
T  3691683 actattttatcatttttgtatgaga-ttttttcaatgaaatttaattttctaggctagtatgatgaagatttgtgtttgtctatg 3691766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 17876114 - 17875993
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        |||||||||||||||| ||||||||||||| |||    
T  17876114 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctctatgttataaaataaca 17876015  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  17876014 acatagttatccttttttatga 17875993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 35483046 - 35482925
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||        ||||| |||||||||||||||||||||||| |||    
T  35483046 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcacaatttagtcctttatgttataaaataaca 35482947  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  35482946 acatagttatccttttttatga 35482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 38464711 - 38464763
Alignment:
Q  264 cgatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38464711 cgatttagtcctttatgttataaaatgacaatatcttatcattttttatgaga 38464763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 4128752 - 4128924
Alignment:
Q  204 acaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatc 303  Q
    ||||||||||  |||| || |||||| |||||||||||||||||||||         | ||||||||||||||||||||||||||||| | ||| |||||    
T  4128752 acaattagtcctttaatttaattttaggtaacactttcgtcctttatcttctttttttaacgatttagtcctttatgttataaaatgaaactattttatc 4128851  T
Q  304 a-ttttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    | ||||||||||||       ||| ||||||||||||||||  || ||||||||||||||| |||||| |||||    
T  4128852 atttttttatgaga-ttttttcaatgaaatttgattttctagactagtatgatgaagatttgcgtttgtctatg 4128924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 30904362 - 30904483
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||| || ||||||||||||||| |||||||||||||||||||||        |||| ||||||||||||||||||||||||| |||    
T  30904362 gcaaaattacacaattaatcccttaactttattttaggtaacactttcgtcctttatcttttttttgtcaggatttagtcctttatgttataaaataaca 30904461  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  30904462 acatagttatccttttttatga 30904483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 27523299 - 27523118
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||| |||  ||||||| ||||||  |||||||||| ||||||||         ||| ||||||||||||||||||||||||||||||    
T  27523299 gcaaaattacacaattcgtcctttaacttaattttagttaacactttcatcctttatatttttcttgtcccgatttagtcctttatgttataaaatgaca 27523200  T
Q  294 atatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||||||| |||||  ||||       ||| ||||||||||||||||  ||||||||||||| ||||  ||||| |||||    
T  27523199 atatcttatcaatttttccgaga-gtttttcaatgaaatttgattttctagacttgtatgatgaaaatttgtgtttgtctatg 27523118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 376
Target Start/End: Complemental strand, 42123977 - 42123864
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatatcttatcattttt-tatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagat 361  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||       ||| |||||||||||||||| ||| ||||||||||| |    
T  42123977 acgatttagtcctttatgttataaaatgacactattttatcatttttgtatgaga-ttttttcaatgaaatttgattttctaggctagtatgatgaaggt 42123879  T
Q  362 ttacgtttgcctatg 376  Q
    || |||||| |||||    
T  42123878 ttgcgtttgtctatg 42123864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 7899830 - 7899943
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatatcttatca-ttttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagat 361  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||       |||  ||||||||||||||| ||| ||||||||| |||    
T  7899830 acgatttagtcctttatgttataaaatgacactattttatcatttttttatgaga-ttttttcaataaaatttgattttctaggctagtatgatgacgat 7899928  T
Q  362 ttacgtttgcctatg 376  Q
    || |||||| |||||    
T  7899929 ttgcgtttgtctatg 7899943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 10682062 - 10682182
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  |||||||| || ||||||||||||||| ||||||||||||| |||||||        |||||||||||||||||||||||||||||| |||    
T  10682062 gcaaaattacacaattaatcccttaactttattttaggtaacactttcgttctttatc-ttttttagtcacgatttagtcctttatgttataaaataaca 10682160  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  10682161 acatagttatccttttttatga 10682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 14577210 - 14577087
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatc--nnnnnnnngtcacgatttagtcctttatgttataaaatga 291  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||          |||||||||||||||| ||||||||||||| |    
T  14577210 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttatcttttttttttgtcacgatttagtcctctatgttataaaataa 14577111  T
Q  292 caatat-cttatcattttttatga 314  Q
    ||| ||  ||||| ||||||||||    
T  14577110 caacatagttatccttttttatga 14577087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 31231360 - 31231317
Alignment:
Q  266 atttagtcctttatgttataaaatgacaatatcttatcattttt 309  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  31231360 atttagtcctttatgttataaaataacaatatcttatcattttt 31231317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 20178372 - 20178428
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||||  ||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  20178372 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 20178428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 20223100 - 20223156
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||||  ||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  20223100 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 20223156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 38464957 - 38464887
Alignment:
Q  219 actttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaat 289  Q
    ||||||||||| |||||||||||||||||||||        ||| |||||||||| |||||||||||||||    
T  38464957 actttattttaggtaacactttcgtcctttatcttttttttgtcccgatttagtcttttatgttataaaat 38464887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 42685087 - 42685044
Alignment:
Q  208 ttagtctcttaactttattttaagtaacactttcgtcctttatc 251  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  42685087 ttagtctcttaacttaattttaagtaacaatttggtcctttatc 42685044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 14577010 - 14577048
Alignment:
Q  338 tttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  14577010 tttctaggcttgtatgatgaagatttgcgtttgcctatg 14577048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 17843890 - 17844005
Alignment:
Q  203 cacaattagtctcttaactttattttaagtaacactttcgtccttta---tcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatat-c 298  Q
    ||||||| |||| ||||||| |||||||||| || ||||||||||||   ||        ||||||||||| ||||||||| ||||||||||||| ||      
T  17843890 cacaattggtcttttaacttaattttaagtatcaatttcgtcctttatcttcttttttttgtcacgatttaatcctttatgatataaaatgacaacatgg 17843989  T
Q  299 ttatcattttttatga 314  Q
    ||||| ||||||||||    
T  17843990 ttatccttttttatga 17844005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 13327263 - 13327319
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttat 250  Q
    |||||||  ||||||||||  |||||||| |||||| ||||||||||| ||||||||    
T  13327263 gcaaaattacacaattagttccttaacttaattttaggtaacactttcatcctttat 13327319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 188 - 375
Target Start/End: Complemental strand, 137264 - 137079
Alignment:
Q  188 aattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaa 287  Q
    ||||| |||||||  || ||||||||  || ||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  137264 aattaggcaaaattacataattagtccatttactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaa 137165  T
Q  288 atgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctat 375  Q
    ||||||||||||||||||||||  |||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  137164 atgacaatatcttatcattttt--tgagatttttttcaaagaaatttgattttatatgcttgtatgatgaagatttacgtttgcctat 137079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 136917 - 137038
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| ||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  136917 gcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 137016  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  137017 acatagttatccttttttatga 137038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 188 - 375
Target Start/End: Complemental strand, 330545 - 330360
Alignment:
Q  188 aattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaa 287  Q
    ||||| |||||||  || ||||||||  || ||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  330545 aattaggcaaaattacataattagtccatttactttattttaggtaacactttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaa 330446  T
Q  288 atgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctat 375  Q
    ||||||||||||||||||||||  |||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  330445 atgacaatatcttatcattttt--tgagatttttttcaaagaaatttgattttatatgcttgtatgatgaagatttacgtttgcctat 330360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 330198 - 330319
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgaca 293  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| ||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  330198 gcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttatcttttttttgtcacgatttagtcctttatgttataaaataaca 330297  T
Q  294 atat-cttatcattttttatga 314  Q
    | ||  ||||| ||||||||||    
T  330298 acatagttatccttttttatga 330319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 376
Target Start/End: Original strand, 12635 - 12780
Alignment:
Q  231 gtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaaatgacaatatcttatcattttt-tatgagannnnnnncaaaga 329  Q
    |||||||||||||||||||||        || ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||       ||| ||    
T  12635 gtaacactttcgtcctttatcttttttttgtaacgatttagtcctttatgttataaaatgacactattttatcatttttgtatgaga-ttttttcaatga 12733  T
Q  330 aatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    |||||||||||||   || ||||||||||||||| |||||| |||||    
T  12734 aatttgattttcttgactagtatgatgaagatttgcgtttgtctatg 12780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 12947 - 12841
Alignment:
Q  188 aattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttataaa 287  Q
    ||||| |||||||  ||||||||||| |||||||| ||||||  ||||| ||||||||||||||        || |||||||||||||||||||||||||    
T  12947 aattaggcaaaattacacaattagtcccttaacttaattttagataacattttcgtcctttatcttttttttgtaacgatttagtcctttatgttataaa 12848  T
Q  288 atgacaa 294  Q
    || ||||    
T  12847 ataacaa 12841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1577 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold1577
Description:

Target: scaffold1577; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 376
Target Start/End: Complemental strand, 1224 - 1035
Alignment:
Q  186 aaaattaagcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtcctttatcnnnnnnnngtcacgatttagtcctttatgttata 285  Q
    ||||||| | |||||  |||||||||||  |||| || |||||| |||||||| |||| |||||||        |||||||||||||| |||||| ||||    
T  1224 aaaattaggtaaaattacacaattagtcctttaatttaattttaggtaacactctcgttctttatcttttttttgtcacgatttagtcttttatgatata 1125  T
Q  286 aaatgacaatatcttatcattttttatgagannnnnnncaaagaaatttgattttctatgcttgtatgatgaagatttacgtttgcctatg 376  Q
    ||||||| |||| |||| |||||||||||||       ||| ||||| |||||||||| | ||||| ||| ||||||| |||||| |||||    
T  1124 aaatgactatattttattattttttatgaga-ttttttcaatgaaatgtgattttctagggttgtacgataaagatttgcgtttgtctatg 1035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1577; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 943 - 995
Alignment:
Q  263 acgatttagtcctttatgttataaaatgacaatat-cttatcattttttatga 314  Q
    ||||||||||||||||||||||||||| |||| ||  ||||| ||||||||||    
T  943 acgatttagtcctttatgttataaaataacaacatagttatccttttttatga 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 12278 - 12223
Alignment:
Q  194 gcaaaatagcacaattagtctcttaactttattttaagtaacactttcgtccttta 249  Q
    |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||    
T  12278 gcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtccttta 12223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 15310 - 15263
Alignment:
Q  265 gatttagtcctttatgttataaaatgacaatatcttatcattttttat 312  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||    
T  15310 gatttagttctttatgttataaaatgacaatttcttataattttttat 15263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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