View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4006_low_10 (Length: 234)
Name: NF4006_low_10
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4006_low_10 |
 | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
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| [»] scaffold0144 (1 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 8974 - 9167
Alignment:
| Q |
21 |
tgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatctt |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
8974 |
tgccgtagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagaggtagtttgccgccgcccttcatctt |
9073 |
T |
|
| Q |
121 |
ctggttggcgctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||||||| |
|
|
| T |
9074 |
ctggttggcgctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcgtcgatctctttagcaatctccttcatcctctt |
9167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 13316 - 13515
Alignment:
| Q |
21 |
tgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatctt |
120 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||| | ||| |||| |||| |||||||| ||||| || |||||| |
|
|
| T |
13316 |
tgccttagcagaaactctacaatctgttctttatctttgtctcttccatatactttcggttcggtgacagcagaagtagtttggcgccattcatcatctc |
13415 |
T |
|
| Q |
121 |
ctggttggcgctcga---tgacccccacatgt---aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| |||||||||| |||| | | ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
13416 |
gtcgttggcgctcctccgtgactgcaaattgttgtaatccgaacttcatcctttcttcagcaatatcatcgatctttttagcaacctccttcatcctctt |
13515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 38939049 - 38938854
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
||||||| |||||| |||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
38939049 |
catgcctcagaagatactcaacaatttgttctttatctttgtctcttccatatacttcggattcagtgatgacagaggtagttttccgccactcttcatc |
38938950 |
T |
|
| Q |
119 |
ttctggttggcgctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38938949 |
ttctggttggcgctccatgacccccacttgtaatccgaacttcatcctttcttcagcaatatcatcgatctttttagcaacctccttcatcctctt |
38938854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 7052956 - 7052758
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
7052956 |
catgcctcagaagaaactcgacaatcttctctttatctttgtctcttccatataccacaacttcagtgatgacagaagtagtttggcgccattcatcatc |
7052857 |
T |
|
| Q |
119 |
ttctggttggcgctcg---atgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| || | || ||||| ||||| ||||| |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
7052856 |
tcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctctttcatcctctt |
7052758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 16781570 - 16781765
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
||||||| |||||| |||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16781570 |
catgcctcagaagatactcaacaatttgttctttatctctgtctcttccatatactttggattcagtgatgacagaggtagtttgccgccactcttcatc |
16781669 |
T |
|
| Q |
119 |
ttctggttggcgctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
|||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
16781670 |
ttctggttggtgctccatgacccccacctgcaatccgaacttcatcctttcttcagcaatatcatcgatctctttagcaatctccttcatcctctt |
16781765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 16987919 - 16988123
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| ||||| ||| ||||||| ||||| || ||||| |
|
|
| T |
16987919 |
catgtcttagaagaaactctacaatctgttctttatctttgtctcttccatatactttcggttctgtgatagtagaaatagtttggcgccattcatcatc |
16988018 |
T |
|
| Q |
119 |
ttctggttggcgctcg---atgacccccacatgt---aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctc |
212 |
Q |
| |
|
| || |||| |||| ||||| ||||| ||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
16988019 |
tcctcgttgatgctcctccatgactcccacttgttgaaatccaaacttgatcctttcttcagcaatatcatcaatctttttagcaactttcttcatcctc |
16988118 |
T |
|
| Q |
213 |
ttccc |
217 |
Q |
| |
|
||||| |
|
|
| T |
16988119 |
ttccc |
16988123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 16867698 - 16867503
Alignment:
| Q |
25 |
ttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctgg |
124 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| || | | ||| ||||||| ||||| || |||||| || | |
|
|
| T |
16867698 |
ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtaacaatagaaatagtttggcgccattcatcatctcctcg |
16867599 |
T |
|
| Q |
125 |
ttggcgctcga---tgacccccacatgt---aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
|||| |||| |||| ||||| || ||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
16867598 |
ttggtgctcctctgtgactcccactagttgaaatccaaacttgatcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt |
16867503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 18872880 - 18872682
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| | || ||||||||||||||||| | ||||||||||||||| |||||| ||||| | ||||| |
|
|
| T |
18872880 |
catgacttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgatgacagaaaaagtttggcgccatttatcatc |
18872781 |
T |
|
| Q |
119 |
ttctggttggcg---ctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| || ||||||| ||| ||||| || | |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18872780 |
tcctcgttggcgatcctccatgactaccgcttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt |
18872682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 16658477 - 16658672
Alignment:
| Q |
25 |
ttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctgg |
124 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||| ||| ||||||| ||||| || |||||| || | |
|
|
| T |
16658477 |
ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcg |
16658576 |
T |
|
| Q |
125 |
ttggcgctcga---tgacccccacatgt---aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
||| |||| |||| ||||| || ||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
16658577 |
ttgctgctcctctgtgactcccaccagttgaaatccaaacttgatcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt |
16658672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 18794273 - 18794119
Alignment:
| Q |
63 |
cttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcg---ctcgatgacccccacatgtaatccgaact |
159 |
Q |
| |
|
|||||||||||||| | |||||||| ||| || |||||||| ||||| || |||||| || ||||||| ||| ||||| || | || ||||| |||| |
|
|
| T |
18794273 |
cttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttggcgatcctccatgactaccgcttgcaatccaaact |
18794174 |
T |
|
| Q |
160 |
tcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18794173 |
tgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt |
18794119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 18805886 - 18805688
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| | || ||||||||||||||||| | |||||||||||| || ||||||| ||||| | ||||| |
|
|
| T |
18805886 |
catgacttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgatgactgaattagtttggcgccatttatcatc |
18805787 |
T |
|
| Q |
119 |
ttctggttggcg---ctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| || ||||||| ||| ||||| || | || ||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18805786 |
tcctcgttggcgatcctccatgactaccgcttgcaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt |
18805688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 16797631 - 16797832
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| |||| |||| |||||| | ||| || ||||| |
|
|
| T |
16797631 |
catgccctagaagaaactctacaatctgttctttatctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatc |
16797730 |
T |
|
| Q |
119 |
ttctggttggcg---ctcgatgacccccac---atgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctc |
212 |
Q |
| |
|
| || ||||| | ||| |||| ||||| || ||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
16797731 |
tcctcgttggtgctcctccgtgactcccactgattgaaatccaaactttttcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctc |
16797830 |
T |
|
| Q |
213 |
tt |
214 |
Q |
| |
|
|| |
|
|
| T |
16797831 |
tt |
16797832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 16838143 - 16838344
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||| |||| |||||| | ||| || ||||| |
|
|
| T |
16838143 |
catgccctataagaaactctacaatctgctctttatctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatc |
16838242 |
T |
|
| Q |
119 |
ttctggttggcg---ctcgatgacccccac---atgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctc |
212 |
Q |
| |
|
| || ||||| | ||| |||| ||||| || ||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
16838243 |
tcctcgttggtgctcctccgtgactcccactgattgaaatccaaactttttcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctc |
16838342 |
T |
|
| Q |
213 |
tt |
214 |
Q |
| |
|
|| |
|
|
| T |
16838343 |
tt |
16838344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 18870362 - 18870205
Alignment:
| Q |
60 |
tctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcg---ctcgatgacccccacatgtaatccga |
156 |
Q |
| |
|
||||||||||| ||||| | |||||||| |||||| |||||||| || || ||| || || ||||||| ||| ||||| |||| |||||||| | |
|
|
| T |
18870362 |
tctcttccataaacttttggttcagtgacgacagaagtagtttggcgattttcatcaactcctcgttggcgatcctccatgactaccacttgtaatccta |
18870263 |
T |
|
| Q |
157 |
acttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| || |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18870262 |
atttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt |
18870205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 17069974 - 17070025
Alignment:
| Q |
25 |
ttagaagaaactctacaatatgctctttatctttgtctcttccatatacttt |
76 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17069974 |
ttagaagaaactctacaatctgctctttatctttgtctcttccatatacttt |
17070025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 18587252 - 18587200
Alignment:
| Q |
162 |
atcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18587252 |
atcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt |
18587200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 16788431 - 16788628
Alignment:
| Q |
20 |
atgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatct |
119 |
Q |
| |
|
|||| ||||| |||||| |||||| |||||||||| | ||| |||||||||||| | ||| |||| |||||| |||||||| |||||||| ||| | |
|
|
| T |
16788431 |
atgctttagaggaaactttacaatctgctctttatatatgtaccttccatatactacaggttcggtgacgacagaagtagtttggcgccactcatcagca |
16788530 |
T |
|
| Q |
120 |
tctggttggcgctcga---tgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
|| |||| ||||| | || ||||| || ||||| |||||||||| |||| ||||||| | | |||||||||||||||| ||||||||||||| |
|
|
| T |
16788531 |
cctcgttgacgctcttctgttactcccacttgcaatccatacttcatcctgtctttagcaataacgtcaatctttttagcaaccgccttcatcctctt |
16788628 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 17070117 - 17070169
Alignment:
| Q |
162 |
atcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
|||||||||| ||||||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
17070117 |
atcctttctttagcaatatcgtcaatccttttagcaacctccttcatcctctt |
17070169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 16844426 - 16844493
Alignment:
| Q |
147 |
tgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||| ||| |||||||| ||| ||||| |||||| |||| |
|
|
| T |
16844426 |
tgtaatccaaacttgattctttcttcagcaatagcatcaatcttttcagctacctctttcatcttctt |
16844493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 9615 - 9810
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
||||||| |||||| |||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9615 |
catgcctcagaagatactcaacaattttttctttatctttgtctcttccaaatactatggattcagtgatgaaggaggtagtttgccgccactcttcatc |
9714 |
T |
|
| Q |
119 |
ttctggttggcgctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
9715 |
ttctggttggtgctccatgacccccacctgtaatccgaacttcatcctttcttcagcaatatcatcaatctctttagcaatctccttcatcctctt |
9810 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 13378566 - 13378757
Alignment:
| Q |
23 |
ccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttct |
122 |
Q |
| |
|
|||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||||||| |||||| |
|
|
| T |
13378566 |
ccttagaagatactcaacaatttgttctttatctttgtctcttccatatactttggatttagtgatgatagaagtagtttggcgccactccatgtcttct |
13378665 |
T |
|
| Q |
123 |
ggttggcgctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
||| | |||| ||||| |||||||||||||| ||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
13378666 |
ggtagatgctccatgactcccacatgtaatccaaacttgatccggtcttcagcaataacatcaatctttttagcaacctctttcatcctctt |
13378757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 9824 - 10022
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| | || |||||||||||||||||| | |||||||| ||| || |||||||| ||||| || ||||| |
|
|
| T |
9824 |
catgacttagaagaaactcaacaacttgctctctgtcacggtctcttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatc |
9923 |
T |
|
| Q |
119 |
ttctggttggcg---ctcgatgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| || ||||||| ||| ||||| || | || ||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9924 |
tcctcgttggcgatcctccatgactaccgcttgcaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt |
10022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 5144 - 5342
Alignment:
| Q |
19 |
catgccttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatc |
118 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| | || ||||||||||||||||| | |||||||| |||||| |||||| ||||| | ||||| |
|
|
| T |
5144 |
catgacttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgacgacagaaaaagtttggcgccatttatcatc |
5243 |
T |
|
| Q |
119 |
ttctggttggcgctcg---atgacccccacatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
| || ||||||| || ||||| || | |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
5244 |
tcctcgttggcgatcttccatgactaccgcttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt |
5342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 37955 - 38150
Alignment:
| Q |
25 |
ttagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctgg |
124 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| |||| ||| ||||||| ||||| || |||||| || | |
|
|
| T |
37955 |
ttagaagaaactctacaatctgttctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcg |
38054 |
T |
|
| Q |
125 |
ttggcg---ctcgatgacccccac---atgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt |
214 |
Q |
| |
|
||| | ||| |||| ||||| || ||||| || || ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38055 |
ttgatgctcctccgtgactcccactcgttgaaatccaaatttgttcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt |
38150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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