View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4006_low_2 (Length: 371)

Name: NF4006_low_2
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4006_low_2
NF4006_low_2
[»] chr4 (52 HSPs)
chr4 (3-365)||(27571655-27572014)
chr4 (1-110)||(27444795-27444904)
chr4 (1-149)||(27431110-27431258)
chr4 (3-201)||(27567287-27567485)
chr4 (13-201)||(27414212-27414402)
chr4 (3-189)||(27411379-27411564)
chr4 (1-191)||(27424432-27424624)
chr4 (1-112)||(27498445-27498556)
chr4 (3-187)||(27418996-27419179)
chr4 (1-152)||(27513735-27513886)
chr4 (1-110)||(27412694-27412803)
chr4 (13-110)||(27505703-27505800)
chr4 (1-106)||(27557519-27557624)
chr4 (2-149)||(27425843-27425990)
chr4 (1-110)||(27516610-27516719)
chr4 (1-109)||(27501347-27501455)
chr4 (3-202)||(27421841-27422043)
chr4 (13-110)||(27479943-27480040)
chr4 (1-110)||(27487013-27487122)
chr4 (13-110)||(27503964-27504061)
chr4 (24-109)||(27554362-27554447)
chr4 (1-110)||(27415651-27415760)
chr4 (13-110)||(27523404-27523501)
chr4 (13-110)||(27526113-27526210)
chr4 (1-110)||(27563347-27563456)
chr4 (31-107)||(27490020-27490096)
chr4 (2-110)||(27570050-27570158)
chr4 (13-110)||(27468328-27468425)
chr4 (1-110)||(27469490-27469599)
chr4 (13-110)||(27475580-27475677)
chr4 (1-110)||(27506728-27506837)
chr4 (13-106)||(27524566-27524659)
chr4 (1-110)||(27585718-27585827)
chr4 (13-109)||(27514933-27515029)
chr4 (1-112)||(27473922-27474033)
chr4 (7-110)||(27478884-27478987)
chr4 (7-110)||(27485944-27486047)
chr4 (39-110)||(27502136-27502207)
chr4 (1-110)||(17970329-17970438)
chr4 (1-110)||(27460508-27460617)
chr4 (1-110)||(27500339-27500448)
chr4 (2-110)||(27423253-27423361)
chr4 (1-109)||(27502809-27502917)
chr4 (60-110)||(27466910-27466960)
chr4 (67-109)||(27507815-27507857)
chr4 (72-110)||(27559241-27559279)
chr4 (13-110)||(27420450-27420547)
chr4 (33-106)||(27556384-27556457)
chr4 (15-106)||(27508896-27508987)
chr4 (60-110)||(27476776-27476826)
chr4 (72-149)||(27565913-27565990)
chr4 (81-110)||(27600663-27600692)
[»] chr3 (12 HSPs)
chr3 (16-110)||(38036794-38036888)
chr3 (15-110)||(38040082-38040177)
chr3 (1-110)||(50909990-50910099)
chr3 (15-110)||(38028767-38028862)
chr3 (1-110)||(55084816-55084925)
chr3 (1-110)||(38024876-38024985)
chr3 (1-110)||(38031328-38031437)
chr3 (1-110)||(38043933-38044042)
chr3 (1-110)||(50904793-50904902)
chr3 (1-110)||(50911870-50911979)
chr3 (15-88)||(38033802-38033875)
chr3 (16-110)||(48840713-48840806)
[»] chr5 (4 HSPs)
chr5 (1-110)||(1756758-1756867)
chr5 (1-109)||(1754243-1754351)
chr5 (2-110)||(1754719-1754827)
chr5 (54-110)||(1759335-1759391)
[»] chr8 (2 HSPs)
chr8 (15-110)||(21604755-21604850)
chr8 (1-110)||(21607297-21607406)
[»] chr2 (1 HSPs)
chr2 (1-110)||(3073599-3073708)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 365
Target Start/End: Original strand, 27571655 - 27572014
Alignment:
Q  3 gtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaa 102  Q
    ||||| ||| ||||||| ||||||||  |||| |||||||||||| | |||||| | || ||| |||| |||||||| ||||||||||||||||||||||    
T  27571655 gtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaa 27571754  T
Q  103 ttccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaatta 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571755 ttccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaatta 27571854  T
Q  203 ctatagaaaccannnnnnnnnnnnctgttgaagannnnnnnattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatg 302  Q
    ||||||||||||            ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571855 ctatagaaacca--ttttttttttctgttgaaga-ttttttattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatg 27571951  T
Q  303 agaatgttaaattattaatgacaccaaatattgttgaaacagttgcagcttttttcatctctc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571952 agaatgttaaattattaatgacaccaaatattgttgaaacagttgcagcttttttcatctctc 27572014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27444904 - 27444795
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444904 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 27444805  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  27444804 aattccttgc 27444795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 27431258 - 27431110
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  27431258 ttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcac 27431159  T
Q  101 aattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 149  Q
    |||||||||| | || || |  ||| ||||| |||||||||| ||||||    
T  27431158 aattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 27431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 27567287 - 27567485
Alignment:
Q  3 gtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaa 102  Q
    ||||| ||| |||||||||||| |||| |||| |||||||||||| | |||||| | || ||| |||| || ||||| ||||||||||||||||||||||    
T  27567287 gtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaa 27567386  T
Q  103 ttccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaatt 201  Q
    |||||||| |||| ||||  ||| || | || ||||||| |||||||||||||  || |||||| |||||||||||||||||| ||||||| |||||||    
T  27567387 ttccttgcagcgaagatgctttcttagaactcacttctcacttgaattgagctgaaggtcatgcaaatggagatttagatagaatagttgaggctaatt 27567485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 27414402 - 27414212
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcgg 112  Q
    |||||||||||| |||| | ||||||||||||||| | |||||| | || ||| |||| |||||||| ||||||||||||||||| |||||||| ||| |    
T  27414402 tatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccgtgcag 27414303  T
Q  113 cgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgctaatggagatttagatagattagttgaagctaatt 201  Q
     || |||||||||| ||| || ||||||||| ||||||||||| |||  || ||||||| |||| |||||||||||||||||| |||||||    
T  27414302 tgaagatgaattccaaaacctcacttctcgcatgaattgagctgtagatattatgctaacggagctttagatagattagttgaggctaatt 27414212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 27411564 - 27411379
Alignment:
Q  3 gtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaa 102  Q
    ||||| ||| |||||||||||| |||| |||| |||||||||||| | |||||||| || ||| |||| |||||||| ||||| ||||||||||||||||    
T  27411564 gtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaa 27411465  T
Q  103 ttccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattag 189  Q
    |||||||| ||||||||||||||| ||| || || ||||| ||| | ||| || || |||| ||||||||||||| |||||||||||    
T  27411464 ttccttgcagcgaggatgaattccaaaacctcacatctcgtttg-agtgaactgtaaatcaagctaatggagattaagatagattag 27411379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 27424624 - 27424432
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||| ||| |||||||||||| |||| | ||||||||||||||  | |||||| | || ||| |||  |||||||| ||||||||||||||||| ||    
T  27424624 ttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggtcttac 27424525  T
Q  101 aattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgctaatggagatttagatagattagtt 191  Q
     ||||| ||| ||||||||||||||| ||| || ||||||||| ||||||||||| |||  ||||||||||| |||||| | |||||||||||    
T  27424524 cattccgtgcagcgaggatgaattccgaaacctcacttctcgcatgaattgagctgtagatatcatgctaatagagattaatatagattagtt 27424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 27498445 - 27498556
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| ||||||||||||| |||| |||| || ||||| || ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||    
T  27498445 ttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcac 27498544  T
Q  101 aattccttgcgg 112  Q
     |||||||||||    
T  27498545 tattccttgcgg 27498556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 27419179 - 27418996
Alignment:
Q  3 gtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaa 102  Q
    ||||| ||| ||||||| ||||||||  |||| |||||||||||| | |||||| | || ||| |||| |||||||| ||||||||||||||||| ||||    
T  27419179 gtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaa 27419080  T
Q  103 ttccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagatt 187  Q
    |||||||||| || ||||  ||| || | || ||||||||||| || |||  | || |||||||||||||||||| |||||||||    
T  27419079 ttccttgcggtgaagatgctttcttacaactcacttctcgctt-aagtgatttgtaaatcatgctaatggagattaagatagatt 27418996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 27513886 - 27513735
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||||||||||||||||| |||| | || || |||||||| ||||| ||||| || |||||||  | |||||| ||||||||||||||||||||    
T  27513886 ttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatgatcatccaatgggtggtctcac 27513787  T
Q  101 aattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattga 152  Q
     ||||||||| | || || | |||| || || | ||||||||||||||||||    
T  27513786 tattccttgcagagaagaagtattcttagatatcacttctcgcttgaattga 27513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27412694 - 27412803
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||||||||||||||||| |||| ||| ||||||||| ||||||| |||||| || ||| | || |||||||| |||||||||||||| |||||    
T  27412694 ttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctcac 27412793  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27412794 cattccttgc 27412803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27505800 - 27505703
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||||| |||| | ||||| |||||||| ||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  27505800 tatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgc 27505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 27557519 - 27557624
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||||||||| |||||||| | |||| ||||||||||||||||  |||||||||| ||||||||||| | |||||  ||||||||||||||||||||    
T  27557519 ttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcac 27557618  T
Q  101 aattcc 106  Q
     |||||    
T  27557619 tattcc 27557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 27425843 - 27425990
Alignment:
Q  2 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 101  Q
    ||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||   |||||| | || |||||||| ||||| |||||||| |||||     
T  27425843 tgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcctcacc 27425942  T
Q  102 attccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 149  Q
    |||||||||  |||||||| ||| | | || | || ||||||||||||    
T  27425943 attccttgcaccgaggatgtatttcaacatatgacatctcgcttgaat 27425990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27516719 - 27516610
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| |||||||| ||||  |||  |||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||    
T  27516719 ttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcac 27516620  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27516619 tattccttgc 27516610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 27501347 - 27501455
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||||||||||||||| | |||| |||  |||||||| || ||||| ||||||||||||||||| | ||| || ||||||| ||||||||||||    
T  27501347 ttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgggtggtctcac 27501446  T
Q  101 aattccttg 109  Q
     ||||||||    
T  27501447 tattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 27422043 - 27421841
Alignment:
Q  3 gtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaatt----cggatatgaccatccaatgggtggtctc 98  Q
    ||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| ||||     ||||| || ||||||| ||||||||||    
T  27422043 gtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatggatacgatcatccaacgggtggtctc 27421944  T
Q  99 acaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagcta 198  Q
    |||||||||||| | || |||   ||| || | || |||||||| |||||||||||  || |||||||||||  ||| ||||||||||||||| | ||||    
T  27421943 acaattccttgcagtgaagattctttcttacaactcacttctcgattgaattgagccgtaaatcatgctaat-cagacttagatagattagttaaggcta 27421845  T
Q  199 atta 202  Q
    ||||    
T  27421844 atta 27421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 27479943 - 27480040
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||||| |||| ||||||| ||| | || ||||| ||||| ||||||||||| | |||||| |||||||||||||||||||| |||||||||    
T  27479943 tatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27487013 - 27487122
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||||||  |||||||||| | |||| |||| ||||||||||| ||||| ||||| || |||||||| | |||||| ||||||||||||||||| ||    
T  27487013 ttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtcttac 27487112  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27487113 tattccttgc 27487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 27503964 - 27504061
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||||| |||| | ||||||||||| || |||| ||||||||||||| | || |||||||| |||||||||||||| ||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 27504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 27554362 - 27554447
Alignment:
Q  24 agccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttg 109  Q
    |||||| |||| |||||||||||  |||||||||| ||||||||||| |||||||| ||||||| |||| ||||||||||||||||    
T  27554362 agccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27415651 - 27415760
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| ||||||||||||| |||| |||| |||||||| || |||| |||||| |||||| | || |||||||| ||| | |||||||| |||||    
T  27415651 ttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcac 27415750  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27415751 cattccttgc 27415760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27523501 - 27523404
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||||| |||| |||| | ||||| |||||||| ||||   |||||||||||||||| | |||||||||||||||||||||||| || |||||||||    
T  27523501 tatcatatttgaaccaaacttcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgc 27523404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27526210 - 27526113
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||||| |||| | ||||| |||||||| ||||  ||||| ||||||||||| | |||||| ||||||| |||||||||||| |||||||||    
T  27526210 tatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgc 27526113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27563456 - 27563347
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||||||  |||||||||||| |||| |||  |||||||| ||  ||| ||||||||| ||| | || |||||||| |||||||||||||| |||||    
T  27563456 ttgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcac 27563357  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  27563356 aattccttgc 27563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 27490020 - 27490096
Alignment:
Q  31 catcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcct 107  Q
    ||||||||||||| || |||||||||||||||||| | || |||||||| |||||||||||||| ||||| ||||||    
T  27490020 catcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 27570158 - 27570050
Alignment:
Q  2 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 101  Q
    |||||||||  |||||||||| |||||| | ||||||||||| ||  ||| |||||| |||||| | ||||||||||| ||||| |||||||| |||||     
T  27570158 tgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcacc 27570059  T
Q  102 attccttgc 110  Q
    |||||||||    
T  27570058 attccttgc 27570050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27468425 - 27468328
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||| | |||| | ||||||||||| || |||| |||| |||||||| |||| |||||||| ||||| |||||||| ||||| |||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27469490 - 27469599
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| |||||||| ||||  ||| ||||||| |||||| | ||||  ||||| || |||||||| | |||||| ||||||||||||||||| ||    
T  27469490 ttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaagctgaagaacaatttgaatatgaacatccaatgggtggtctaac 27469589  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27469590 tattccttgc 27469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||||||||||  ||| | ||||||||||| || |||| ||||||||||||| | || |||||||| ||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27506728 - 27506837
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||||||||||||||| | |||| |||  |||||||||||  |  ||||||| || ||| |||| |||||||| ||||| |||||||| |||||    
T  27506728 ttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggactcac 27506827  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27506828 cattccttgc 27506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 27524566 - 27524659
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcc 106  Q
    ||||||| |||| |||| | ||||||||||| || ||||||||||| |||||| | || |||||||| |||||||||||||| ||||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27585718 - 27585827
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||||||  |||||||||||| |||| |||  |||||||| ||  ||| ||||||||| ||| | || |||||||| ||||||||||| ||||||||    
T  27585718 ttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 27585817  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27585818 cattccttgc 27585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 27514933 - 27515029
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttg 109  Q
    ||||||||||||  ||| | ||||||||||| || |||| |||| |||||||| |||| |||||||| ||||| |||||||| ||||| ||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 27473922 - 27474033
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| |||||||| ||||  |||  |||||| ||||||||  |||  |||   ||||||||||| | |||||| ||||||||||||||||||||    
T  27473922 ttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcac 27474021  T
Q  101 aattccttgcgg 112  Q
     |||||||||||    
T  27474022 cattccttgcgg 27474033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 27478987 - 27478884
Alignment:
Q  7 tcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcc 106  Q
    |||||||||||||||||| |||| |||  |||||||||||  |  ||||||| || ||| |||| |||||||| ||||| |||||||| ||||| |||||    
T  27478987 tcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattcc 27478888  T
Q  107 ttgc 110  Q
    ||||    
T  27478887 ttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 27486047 - 27485944
Alignment:
Q  7 tcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcc 106  Q
    |||||||||||||||||| |||| |||  |||||||||||  |  ||||||| || ||| |||| |||||||| ||||| |||||||| ||||| |||||    
T  27486047 tcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattcc 27485948  T
Q  107 ttgc 110  Q
    ||||    
T  27485947 ttgc 27485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 27502207 - 27502136
Alignment:
Q  39 caagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||| ||||| ||||| ||||||||||| | |||||| ||||||||||||||||| || |||||||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27502136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17970329 - 17970438
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| |  |||||||||| |||| | ||||||||| | ||  ||| ||  || |||||| |||||||||| || |||||||||||||| |||||    
T  17970329 ttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcac 17970428  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  17970429 aattccttgc 17970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27460508 - 27460617
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| |||||||| ||||  |||  |||||| ||||||||  |||  |||   ||||||||||| | |||||| ||||||||||||||||||||    
T  27460508 ttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcac 27460607  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27460608 cattccttgc 27460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27500448 - 27500339
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| ||||||||||| | ||||   ||||| ||||||||  |||  ||| | || ||||| ||||||||||||||||||||||||||  ||||    
T  27500448 ttgtgatccctatatcatacttaaaccaaagttcattccaagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcac 27500349  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  27500348 tattccttgc 27500339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 27423253 - 27423361
Alignment:
Q  2 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 101  Q
    ||||||||  ||||||||||||| |||| | |||||||||||||| |||| ||||||||||||| | || || ||  | ||||| |||||||| |||||     
T  27423253 tgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 27423352  T
Q  102 attccttgc 110  Q
     ||||||||    
T  27423353 gttccttgc 27423361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 27502917 - 27502809
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||| ||||| ||||| ||||  ||| | ||||||||||| ||  |||  ||||| | |||| |||| |||||||||||||||||||||||||| ||    
T  27502917 ttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtcttac 27502818  T
Q  101 aattccttg 109  Q
     ||||||||    
T  27502817 tattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 27466910 - 27466960
Alignment:
Q  60 gaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||||||||| | |||||| |||||||||||||||||||| |||||||||    
T  27466910 gaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgc 27466960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 27507857 - 27507815
Alignment:
Q  67 aattcggatatgaccatccaatgggtggtctcacaattccttg 109  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  27507857 aatttggatatgaccatccaatgggtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 27559279 - 27559241
Alignment:
Q  72 ggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  27559279 ggatatgatcatccaatgggtggtctcacaattccttgc 27559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 27420450 - 27420547
Alignment:
Q  13 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||||||||||||||| | ||||||||||  ||  ||| |||||  |||||| | || |||||||| ||||| |||||||| ||||| |||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 27556457 - 27556384
Alignment:
Q  33 tcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcc 106  Q
    ||||||||||||||| |  ||||||| || ||| |||| |||||||| ||| | ||||||||||||||||||||    
T  27556457 tcatttcaagaattactacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattcc 27556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  15 tcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcc 106  Q
    ||||| |||| |||| | ||||||||||| || |||||||| || |||||| | || |||||||| ||||||| |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 27476776 - 27476826
Alignment:
Q  60 gaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||||||||| | |||||| ||||||||||||||||| || |||||||||    
T  27476776 gaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 27565990 - 27565913
Alignment:
Q  72 ggatatgaccatccaatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 149  Q
    |||||||| |||||||||||||| ||||| |||||||| ||||| ||||  |||| | || | |||||| ||||||||    
T  27565990 ggatatgatcatccaatgggtggcctcaccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaat 27565913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 27600663 - 27600692
Alignment:
Q  81 catccaatgggtggtctcacaattccttgc 110  Q
    ||||||||||||||||||||||||||||||    
T  27600663 catccaatgggtggtctcacaattccttgc 27600692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 38036888 - 38036794
Alignment:
Q  16 catacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||||||| |||| | ||||||||| | || |||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||    
T  38036888 catacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38036794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 38040177 - 38040082
Alignment:
Q  15 tcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||| |||| | ||||||||| |  | |||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||    
T  38040177 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38040082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 50909990 - 50910099
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||| ||||| || |||||||||| |||| | ||||||||| | || ||||||||||  |||||| |||| |||||||| |||||||||||||| |||||    
T  50909990 ttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcac 50910089  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  50910090 aattccttgc 50910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 38028862 - 38028767
Alignment:
Q  15 tcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||| |||| | ||||||||| |  | |||| ||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||    
T  38028862 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgc 38028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 55084816 - 55084925
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| || || ||||||| |||| ||||||||||||| || |||| ||  || |||||| |||| ||||| || |||||||||||||| |||||    
T  55084816 ttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctcac 55084915  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  55084916 aattccttgc 55084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 38024985 - 38024876
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||| ||||| || |||||||||| |||| | || |||||| | ||||||| |||||| |||||| |||| |||||||| || ||||||||||| |||||    
T  38024985 ttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcac 38024886  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  38024885 gattccttgc 38024876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 38031437 - 38031328
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||| ||||| || |||||||||| |||| | || |||||| | ||||||| |||||| |||||| |||| |||||||| || ||||||||||| |||||    
T  38031437 ttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcac 38031338  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  38031337 gattccttgc 38031328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 38043933 - 38044042
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| || ||||||||||  ||| | || |||||||| ||  ||| |||||| |||||| |||| |||||||| ||||||||||| || |||||    
T  38043933 ttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcac 38044032  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  38044033 aattccttgc 38044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 50904902 - 50904793
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||  || || ||||||| |||| | ||||||||||| || |||| || ||| |||||  ||||||||||||| |||||||||||||| |||||    
T  50904902 ttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcac 50904803  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  50904802 cattccttgc 50904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 50911979 - 50911870
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| |  |||||||||| |||| | ||||||||| | || |||| |||||| |||||| |||| |||||||| || ||||||||||| || ||    
T  50911979 ttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaac 50911880  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  50911879 aattccttgc 50911870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 38033875 - 38033802
Alignment:
Q  15 tcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaat 88  Q
    |||||||||| |||| | ||||||||| | || |||| ||||||||||||| |||| |||||||||||||||||    
T  38033875 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaat 38033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 48840806 - 48840713
Alignment:
Q  16 catacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||||||| |||| | ||||||||||| || |||| | |||  ||| || |||| |||||||| |||||||||||||| |||||||||||||||    
T  48840806 catacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgc 48840713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1756867 - 1756758
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||||||||||||||||| |||| |||| |||||| | || |||| |||||| || ||| |||| |||||||| || || |||||||| |||||    
T  1756867 ttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggatatgatcaccccatgggtggcctcac 1756768  T
Q  101 aattccttgc 110  Q
     |||||||||    
T  1756767 cattccttgc 1756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1754351 - 1754243
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    ||||||||||  |||||||||||| |||||| ||||||||| ||||  | ||  || | |||||||| || | |||||| ||||| ||||||||||||||    
T  1754351 ttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgggtggtctcac 1754252  T
Q  101 aattccttg 109  Q
     ||||||||    
T  1754251 tattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 1754719 - 1754827
Alignment:
Q  2 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 101  Q
    |||||||||||||||||||||||  ||| |||| ||||||   || |||| |||||| | |||| | || |||||||| |||||||||||||| |||||     
T  1754719 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggtggcctcacc 1754818  T
Q  102 attccttgc 110  Q
    |||| ||||    
T  1754819 attctttgc 1754827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 1759335 - 1759391
Alignment:
Q  54 caagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    ||||| ||||||||||| | |||  |||||||||||||||||||||| |||| ||||    
T  1759335 caagctgaggaacaatttgaatacaaccatccaatgggtggtctcaccattctttgc 1759391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 21604850 - 21604755
Alignment:
Q  15 tcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 110  Q
    |||||||||| |||| | ||||||||| |  | |||| ||||| ||||||| |||| |||||||||||||||||||| || |||||||||||||||    
T  21604850 tcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgc 21604755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21607406 - 21607297
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||| ||||| || |||||||||| || | | || |||||| | ||||||| |||||| |||||| |||| |||||||| || ||||||||||| |||||    
T  21607406 ttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcac 21607307  T
Q  101 aattccttgc 110  Q
      ||||||||    
T  21607306 ggttccttgc 21607297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3073599 - 3073708
Alignment:
Q  1 ttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 100  Q
    |||||||||| |  |||||||||| |||| | ||||||||| | ||  ||| ||  || |||||| |||||||||| || |||||||||||||| |||||    
T  3073599 ttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcac 3073698  T
Q  101 aattccttgc 110  Q
    ||||||||||    
T  3073699 aattccttgc 3073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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