View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4006_low_3 (Length: 369)
Name: NF4006_low_3
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4006_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 30576524 - 30576177
Alignment:
| Q |
7 |
gaagcatagggaggaattgagatttgttaatattctgtgaatagatcagtggctctgttgtcgatagggaaacccttggaagagagttctctttcctatt |
106 |
Q |
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| T |
30576524 |
gaagtatagggaggaattgagatttgttaatattctgtgaatagatcagtggttctgttgtcgatagggaaacccttggaagagagttctctttcctatt |
30576425 |
T |
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| Q |
107 |
ttcttaacagaaatgttctttttattcaattcaatttcttggttcctaacaaggtcacacaacaatattgttcacacttcacacattcttgattctggtt |
206 |
Q |
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| T |
30576424 |
ttcttaacagaaatgttctttttattcaattcaatatcttcgttcctaacaaggtcacacaacaatattgttcacacttcacacattcttgattctggtt |
30576325 |
T |
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| Q |
207 |
cttgccaattacaaagtttggtgaattgttattttcattactatagcttcaatgtaatagtcctcctcatccctcttgtatataaatttaatgtaatgct |
306 |
Q |
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| T |
30576324 |
cttgccaattacaaagtttgctgaattgttattttcattactatagcttcaatgtaatagtcctcctcatccatcttgtatataaatttaatgtaatgct |
30576225 |
T |
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| Q |
307 |
gatccattaatcaatggttctttcttcaatataattgttctccttcct |
354 |
Q |
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| T |
30576224 |
gatccattaatcaatggttctttcttcaatataattgttctccttcct |
30576177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 21524226 - 21524287
Alignment:
| Q |
96 |
tctttcctattttcttaacagaaatgttctttttattcaattcaatttcttggttcctaaca |
157 |
Q |
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| T |
21524226 |
tctttcctattttcttaataaatgtgttctttctattgaatacaaattcttggttcctaaca |
21524287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 21534786 - 21534847
Alignment:
| Q |
96 |
tctttcctattttcttaacagaaatgttctttttattcaattcaatttcttggttcctaaca |
157 |
Q |
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|||||||||||||||||| | | |||||||| |||| ||| ||| |||||||||||||||| |
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| T |
21534786 |
tctttcctattttcttaataaatgtgttctttctattgaatacaaattcttggttcctaaca |
21534847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 20642106 - 20642045
Alignment:
| Q |
96 |
tctttcctattttcttaacagaaatgttctttttattcaattcaatttcttggttcctaaca |
157 |
Q |
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| T |
20642106 |
tctttcctattttcttaataaaagttttctttctattgaatacaaattcttggttcctaaca |
20642045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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