View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4006_low_4 (Length: 277)

Name: NF4006_low_4
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4006_low_4
NF4006_low_4
[»] chr7 (34 HSPs)
chr7 (18-150)||(17904161-17904293)
chr7 (18-148)||(29427311-29427441)
chr7 (18-148)||(26770179-26770309)
chr7 (18-148)||(46467482-46467612)
chr7 (18-148)||(37179479-37179608)
chr7 (18-148)||(6387839-6387969)
chr7 (18-148)||(6389732-6389862)
chr7 (18-150)||(29890973-29891105)
chr7 (18-149)||(9876263-9876393)
chr7 (18-148)||(41922001-41922131)
chr7 (25-144)||(31503091-31503210)
chr7 (18-148)||(4405109-4405239)
chr7 (39-148)||(19523863-19523974)
chr7 (49-145)||(9332364-9332460)
chr7 (33-133)||(33974506-33974606)
chr7 (33-148)||(12252069-12252184)
chr7 (33-148)||(29722955-29723070)
chr7 (33-148)||(43701551-43701666)
chr7 (37-133)||(46689878-46689974)
chr7 (37-128)||(9215631-9215722)
chr7 (33-148)||(31858257-31858371)
chr7 (33-148)||(33379130-33379244)
chr7 (71-133)||(49011058-49011120)
chr7 (33-148)||(33915717-33915830)
chr7 (115-150)||(17904407-17904442)
chr7 (115-148)||(4405353-4405386)
chr7 (115-148)||(29723381-29723414)
chr7 (115-148)||(29890826-29890859)
chr7 (115-148)||(37179331-37179364)
chr7 (33-90)||(48049057-48049114)
chr7 (116-148)||(46467335-46467367)
chr7 (33-128)||(5514797-5514891)
chr7 (115-148)||(6387692-6387725)
chr7 (116-148)||(26770424-26770456)
[»] chr3 (35 HSPs)
chr3 (18-150)||(18996965-18997097)
chr3 (18-150)||(18999504-18999636)
chr3 (18-148)||(29371685-29371815)
chr3 (18-150)||(39528747-39528879)
chr3 (18-148)||(1352143-1352273)
chr3 (18-148)||(32677624-32677754)
chr3 (18-151)||(28228433-28228566)
chr3 (18-148)||(41349518-41349648)
chr3 (18-148)||(39807126-39807256)
chr3 (18-148)||(55365908-55366038)
chr3 (18-141)||(29014837-29014960)
chr3 (18-148)||(36737981-36738111)
chr3 (18-145)||(21974152-21974279)
chr3 (18-145)||(21996583-21996710)
chr3 (18-142)||(38855323-38855447)
chr3 (18-145)||(22157261-22157388)
chr3 (18-133)||(39518422-39518537)
chr3 (20-148)||(32839949-32840076)
chr3 (35-133)||(49041011-49041107)
chr3 (79-148)||(49319347-49319416)
chr3 (115-148)||(1351996-1352029)
chr3 (115-148)||(18997211-18997244)
chr3 (115-148)||(18999750-18999783)
chr3 (115-148)||(29014690-29014723)
chr3 (115-148)||(36737834-36737867)
chr3 (115-148)||(38855561-38855594)
chr3 (115-148)||(39518651-39518684)
chr3 (115-148)||(39528993-39529026)
chr3 (115-148)||(41349371-41349404)
chr3 (115-151)||(39806976-39807012)
chr3 (116-148)||(46878980-46879012)
chr3 (36-123)||(837370-837455)
chr3 (115-150)||(29371536-29371571)
chr3 (115-150)||(32677475-32677510)
chr3 (42-142)||(34667662-34667762)
[»] chr8 (24 HSPs)
chr8 (18-148)||(33837876-33838006)
chr8 (18-150)||(2508943-2509075)
chr8 (18-148)||(28378947-28379077)
chr8 (18-143)||(13469652-13469777)
chr8 (18-149)||(45334423-45334554)
chr8 (18-148)||(25106211-25106341)
chr8 (18-148)||(38495619-38495749)
chr8 (18-154)||(9739979-9740115)
chr8 (25-148)||(27793345-27793468)
chr8 (21-148)||(32183630-32183759)
chr8 (18-104)||(2626385-2626472)
chr8 (79-148)||(27024433-27024502)
chr8 (81-148)||(25978969-25979036)
chr8 (33-148)||(8235162-8235276)
chr8 (33-113)||(3203413-3203492)
chr8 (86-133)||(2626667-2626714)
chr8 (115-148)||(25106455-25106488)
chr8 (115-148)||(27027655-27027688)
chr8 (115-148)||(28379191-28379224)
chr8 (115-148)||(33837729-33837762)
chr8 (115-148)||(45334276-45334309)
chr8 (116-148)||(9740231-9740263)
chr8 (115-148)||(38495472-38495505)
chr8 (116-148)||(13469508-13469540)
[»] chr6 (16 HSPs)
chr6 (18-148)||(27312263-27312393)
chr6 (18-148)||(32274434-32274564)
chr6 (18-150)||(5003880-5004012)
chr6 (18-146)||(8504849-8504977)
chr6 (46-148)||(12174700-12174802)
chr6 (20-148)||(29452691-29452820)
chr6 (33-148)||(18741947-18742062)
chr6 (20-148)||(31171139-31171267)
chr6 (59-148)||(7156413-7156502)
chr6 (18-87)||(2543142-2543211)
chr6 (100-150)||(29302500-29302550)
chr6 (115-150)||(8504731-8504766)
chr6 (115-148)||(27312114-27312147)
chr6 (115-149)||(32274678-32274712)
chr6 (115-148)||(2543325-2543358)
chr6 (116-148)||(18742191-18742223)
[»] chr5 (24 HSPs)
chr5 (18-148)||(12399093-12399223)
chr5 (18-148)||(34208538-34208668)
chr5 (18-148)||(29874954-29875084)
chr5 (18-148)||(23090298-23090428)
chr5 (18-148)||(4145694-4145824)
chr5 (18-148)||(4695309-4695439)
chr5 (18-148)||(3077597-3077727)
chr5 (18-133)||(42757957-42758072)
chr5 (33-160)||(41610579-41610706)
chr5 (33-133)||(12096365-12096466)
chr5 (79-148)||(42793040-42793109)
chr5 (18-83)||(22646056-22646121)
chr5 (81-145)||(4434783-4434847)
chr5 (115-148)||(12398946-12398979)
chr5 (115-148)||(29875198-29875231)
chr5 (115-148)||(42757805-42757838)
chr5 (115-148)||(42793562-42793595)
chr5 (116-148)||(23090543-23090575)
chr5 (116-148)||(41610373-41610405)
chr5 (37-148)||(19574686-19574795)
chr5 (99-133)||(594328-594362)
chr5 (79-145)||(8718028-8718094)
chr5 (33-127)||(22528023-22528117)
chr5 (115-148)||(34208782-34208815)
[»] chr1 (29 HSPs)
chr1 (21-148)||(4817269-4817396)
chr1 (18-148)||(46220259-46220389)
chr1 (18-148)||(47669119-47669249)
chr1 (21-148)||(18126851-18126978)
chr1 (18-148)||(10737848-10737978)
chr1 (20-148)||(9831503-9831631)
chr1 (18-148)||(4055484-4055614)
chr1 (18-148)||(48564818-48564947)
chr1 (18-148)||(3384742-3384870)
chr1 (18-133)||(8889457-8889572)
chr1 (18-147)||(7414208-7414337)
chr1 (46-149)||(1236205-1236308)
chr1 (69-148)||(1749521-1749600)
chr1 (18-128)||(39241172-39241282)
chr1 (79-148)||(33020206-33020275)
chr1 (33-125)||(26842462-26842552)
chr1 (33-148)||(33846820-33846935)
chr1 (33-148)||(33947043-33947158)
chr1 (20-91)||(37875849-37875920)
chr1 (115-150)||(47669363-47669398)
chr1 (115-148)||(10737701-10737734)
chr1 (115-148)||(46220503-46220536)
chr1 (115-147)||(1236071-1236103)
chr1 (115-151)||(8889687-8889723)
chr1 (117-148)||(48565063-48565094)
chr1 (33-133)||(49112439-49112535)
chr1 (115-145)||(9831747-9831777)
chr1 (115-148)||(33023428-33023461)
chr1 (115-148)||(37875727-37875760)
[»] chr2 (15 HSPs)
chr2 (18-146)||(15233757-15233885)
chr2 (18-148)||(43040996-43041126)
chr2 (18-148)||(35793054-35793183)
chr2 (18-148)||(41252415-41252545)
chr2 (18-148)||(31296083-31296213)
chr2 (21-148)||(44104699-44104833)
chr2 (18-148)||(41642891-41643024)
chr2 (18-133)||(31903527-31903641)
chr2 (79-148)||(10118660-10118729)
chr2 (19-133)||(21727684-21727801)
chr2 (115-148)||(10112339-10112372)
chr2 (115-148)||(15233999-15234032)
chr2 (79-148)||(36963131-36963200)
chr2 (115-148)||(43040849-43040882)
chr2 (116-148)||(44104546-44104578)
[»] chr4 (20 HSPs)
chr4 (18-148)||(45590742-45590872)
chr4 (18-138)||(34334342-34334462)
chr4 (18-148)||(8955923-8956053)
chr4 (30-148)||(33288564-33288682)
chr4 (18-142)||(49162108-49162231)
chr4 (56-148)||(30469353-30469445)
chr4 (49-145)||(39481906-39482002)
chr4 (18-148)||(18835705-18835837)
chr4 (20-133)||(50774207-50774325)
chr4 (79-148)||(19256186-19256255)
chr4 (33-133)||(26025685-26025784)
chr4 (98-148)||(36016279-36016329)
chr4 (79-133)||(36968353-36968407)
chr4 (20-82)||(36971115-36971176)
chr4 (33-133)||(33109063-33109163)
chr4 (114-150)||(19257103-19257139)
chr4 (115-150)||(45590986-45591021)
chr4 (115-145)||(8955779-8955809)
chr4 (115-148)||(49162332-49162365)
chr4 (115-147)||(39482106-39482138)
[»] scaffold0103 (1 HSPs)
scaffold0103 (18-148)||(44619-44750)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 17904293 - 17904161
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17904293 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 17904194  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||    
T  17904193 aaacatcaaaagaaaaggaatggagggagtagt 17904161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 29427311 - 29427441
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29427311 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 29427410  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  29427411 aaacatcaaaagaaaaggaatggagggagta 29427441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 26770309 - 26770179
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  26770309 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatttagttgaagttcta 26770210  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  26770209 aaacatcaaaagaaaaggaatggagggagta 26770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 46467482 - 46467612
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46467482 actttaatagtttattgtgttttccaacaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 46467581  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  46467582 aaacatcaaaagaaaaggaatggagggagta 46467612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 37179479 - 37179608
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37179479 actttaatagtttattgtgttttccaacaagggtaaactt-agaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 37179577  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  37179578 aaacatcaaaagaaaaggaatggagggagta 37179608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 6387839 - 6387969
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||    
T  6387839 actttaatagtttattgtgttttccaacaagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgcagttcta 6387938  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  6387939 aaacatcaaaagaaaaggaatggagggagta 6387969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 6389862 - 6389732
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6389862 actttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 6389763  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||| |||| ||||||||||||||    
T  6389762 aaacatcaaaacaaaatgaatggagggagta 6389732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 29890973 - 29891105
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||    
T  29890973 actttaatagtttattgtgttttccatcaaggataaacttgagaaaacaatcataaattcactaaaacatcaaaaattttggaatatagttgaagtttta 29891072  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||    
T  29891073 aaacatcaaaagaaaaggaatggagggagtagt 29891105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 9876393 - 9876263
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  9876393 actttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagtttta 9876294  T
Q  118 aaacatcaaaagaaaaggaatggagggagtag 149  Q
    ||||||||||||||||||||||| ||||||||    
T  9876293 aaacatcaaaagaaaaggaatgg-gggagtag 9876263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 41922001 - 41922131
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  41922001 actttaatagtttattgtgtttttcaacaagggtaaacttgataaaacaatattaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 41922100  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||| ||| |||||||||    
T  41922101 aaacatcaaaagaaaagaaatagagggagta 41922131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 31503091 - 31503210
Alignment:
Q  25 tagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 124  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31503091 tagtttatagtgttttccaacaagggtaaacttaagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 31503190  T
Q  125 aaaagaaaaggaatggaggg 144  Q
    ||||||||||||| ||||||    
T  31503191 aaaagaaaaggaacggaggg 31503210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4405239 - 4405109
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||    
T  4405239 actttaataatttatggtgttttccaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaatgttttagaatatagttgaagtttta 4405140  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||| |||||||||||||    
T  4405139 aaacatcaaaagaaaagaaatggagggagta 4405109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 19523863 - 19523974
Alignment:
Q  39 ttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca--aaagaaaagga 136  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||    
T  19523863 ttccaacaagggtaaacttgataaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttctaaaacatcaacaaaaaaaagga 19523962  T
Q  137 atggagggagta 148  Q
    || |||||||||    
T  19523963 atagagggagta 19523974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 9332460 - 9332364
Alignment:
Q  49 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  9332460 ggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaaaaaatggaggga 9332364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 33974606 - 33974506
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||    
T  33974606 tgtgtttttcaacaagggtaaacttgggaaaaaaatattaaatatactaaaacataaaatattttggaatatagttgaagttcgaaaacatcaaaagaaa 33974507  T
Q  133 a 133  Q
    |    
T  33974506 a 33974506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 12252184 - 12252069
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| |||| || ||||||||| |||||||| | ||||| || || |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  12252184 tgtgtttttcaactagagtaaacttgggaaaacaagattaaatatattagaacatcaaatattttggaatatagttgaagttctaaaacatcaaaagaaa 12252085  T
Q  133 aggaatggagggagta 148  Q
    |  |||||||||||||    
T  12252084 aaaaatggagggagta 12252069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 29723070 - 29722955
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| |||   ||| | |||||||  |  |||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  29723070 tgtgtttttcaacaagggtaaaattggataaaaagtaataaaaattataaaacatcaaaagttttggaataaagtttaagttctaaaatatcaaaagaaa 29722971  T
Q  133 aggaatggagggagta 148  Q
    |||||||||| |||||    
T  29722970 aggaatggagagagta 29722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 43701666 - 43701551
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| |||   ||| |||| ||||  | |||||||||||||  |||||||||  |||| |||||||||||||||||||||||    
T  43701666 tgtgtttttcaacaagggtaaaattggataaaaaatattaaaaattctaaaacatcaaattttttggaatgaagtttaagttctaaaacatcaaaagaaa 43701567  T
Q  133 aggaatggagggagta 148  Q
    ||||||||||||||||    
T  43701566 aggaatggagggagta 43701551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 46689974 - 46689878
Alignment:
Q  37 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||| ||| ||||||||||||| ||||| |||| |||   ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  46689974 tttttcaaaaagggtaaacttgggaaaaaaatattaaccatactaaaacatcaagtattttggaatatagttgaagttctaaaacatcaaaagaaaa 46689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 9215631 - 9215722
Alignment:
Q  37 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaa 128  Q
    |||| ||||||||||||| |||| |||| |||| || || ||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  9215631 tttttcaacaagggtaaatttgaaaaaaaaatattacatatactaaaacattaaatattttggaatatagttgaagttctaaaacatcaaaa 9215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 31858257 - 31858371
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| |||| |||||||| ||| ||||| || | ||||| |||||||||||||||  ||||  ||||||||||||||| |||||||||||||||||    
T  31858257 tgtgtttttcaacgagggtaaatttgggaaaaaaa-attaaatatactaaaacatcaaatattttaaaatatagttgaagttgtaaaacatcaaaagaaa 31858355  T
Q  133 aggaatggagggagta 148  Q
    |  |||||||||||||    
T  31858356 aaaaatggagggagta 31858371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 33379130 - 33379244
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||| || || |||| ||||  | |||||||||||||  ||||| |||  ||||||||||||||||||||||||||||    
T  33379130 tgtgtttttcaacaagggtaaaattg-gataaaaatattaaaaatcctaaaacatcaaatattttgaaatcaagttgaagttctaaaacatcaaaagaaa 33379228  T
Q  133 aggaatggagggagta 148  Q
    || |||||||||||||    
T  33379229 agaaatggagggagta 33379244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 49011058 - 49011120
Alignment:
Q  71 taaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  49011058 taaatatactaaaacatcaaatgttttgaaatatagttgaagtcctaaaacatcaaaagaaaa 49011120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 33915830 - 33915717
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| |||||||| |||||||| ||||| || | ||||| |||||||||||||||  ||||| ||||||||| || ||| |||||| |||||||||    
T  33915830 tgtgtttttcaacaagg-taaacttgggaaaaaaaaattaaatatactaaaacatcaaatattttgaaatatagttaaaattcaaaaacaacaaaagaaa 33915732  T
Q  133 aggaatggagggagta 148  Q
    |  |||||||||||||    
T  33915731 a-aaatggagggagta 33915717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 17904407 - 17904442
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  17904407 ctaaaacatcaaaagaaaaggaatggagggagtagt 17904442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 4405353 - 4405386
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  4405353 ctaaaacatcaaaagaaaaggaatggagggagta 4405386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 29723381 - 29723414
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  29723381 ctaaaacatcaaaagaaaaggaatggagggagta 29723414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 29890859 - 29890826
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  29890859 ctaaaacatcaaaagaaaaggaatggagggagta 29890826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 37179364 - 37179331
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  37179364 ctaaaacatcaaaagaaaaggaatggagggagta 37179331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 48049114 - 48049057
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaa 90  Q
    |||||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||||||    
T  48049114 tgtgtttttcaacaggggtaaacttgggaaaaaaatattaaatatactaaaacatcaa 48049057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 46467367 - 46467335
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  46467367 taaaacatcaaaagaaaaggaatggagggagta 46467335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 5514891 - 5514797
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaa 128  Q
    ||||||||  ||||||||||||||||| || | |||| ||||| |||||||  ||||||  |||| ||||||| || |||||||||||||| ||||    
T  5514891 tgtgttttttaacaagggtaaacttgaaaata-aatattaaatatactaaataatcaaatattttagaatatatttaaagttctaaaacattaaaa 5514797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 6387725 - 6387692
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||| ||||    
T  6387725 ctaaaacatcaaaagaaaaggaatggaggaagta 6387692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 26770424 - 26770456
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||| ||||||||||||||    
T  26770424 taaaacatcaaaagaaaatgaatggagggagta 26770456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 18997097 - 18996965
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18997097 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 18996998  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||    
T  18996997 aaacatcaaaagaaaaggaatggagggagtagt 18996965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 18999636 - 18999504
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18999636 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 18999537  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||    
T  18999536 aaacatcaaaagaaaaggaatggagggagtagt 18999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 29371685 - 29371815
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29371685 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 29371784  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  29371785 aaacatcaaaagaaaaggaatggagggagta 29371815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 39528879 - 39528747
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  39528879 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 39528780  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||    
T  39528779 aaacatcaaaagaaaaggaatggagggagtagt 39528747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 1352143 - 1352273
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  1352143 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 1352242  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  1352243 aaacatcaaaagaaaaggaatggagggagta 1352273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 32677624 - 32677754
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  32677624 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggtatatagttgaagttcta 32677723  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  32677724 aaacatcaaaagaaaaggaatggagggagta 32677754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 28228566 - 28228433
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28228566 actttaatagtttattgtattttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 28228467  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagtt 151  Q
    ||||||||||||||||||||||||| ||||||||    
T  28228466 aaacatcaaaagaaaaggaatggagagagtagtt 28228433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 41349518 - 41349648
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  41349518 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttagaatatagttgaagttcta 41349617  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  41349618 aaacatcaaaagaaaaggaatggagggagta 41349648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 39807126 - 39807256
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  39807126 actttaatagtttattgtgttttccaacgagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgtaatatagttgaagttcta 39807225  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||| ||||    
T  39807226 aaacatcaaaagaaaaggaatggaggaagta 39807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 55366038 - 55365908
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||| ||||||||||||||||||    
T  55366038 actttaatagtttattgtgttttctaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttgaaatatagttgaagttcta 55365939  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||| ||||||||    
T  55365938 aaacatcaaaagaaaaggaatgaagggagta 55365908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 29014837 - 29014960
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29014837 actttaatagtttaatgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 29014936  T
Q  118 aaacatcaaaagaaaaggaatgga 141  Q
    |||||| |||| |||| |||||||    
T  29014937 aaacataaaaaaaaaaagaatgga 29014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 36737981 - 36738111
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  36737981 actttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttaaaatatagttaaagttcta 36738080  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||| | ||||||    
T  36738081 aaacatcaaaagaaaaggaatgaatggagta 36738111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 21974279 - 21974152
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  21974279 actttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaaattcta 21974180  T
Q  118 aaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||| ||||||||||    
T  21974179 aaacatcaaaagaaaagaaatggaggga 21974152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 21996710 - 21996583
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  21996710 actttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaaattcta 21996611  T
Q  118 aaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||| ||||||||||    
T  21996610 aaacatcaaaagaaaagaaatggaggga 21996583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 38855447 - 38855323
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||    
T  38855447 actttaatagtttatggtgtttttcaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgatgtttta 38855348  T
Q  118 aaacatcaaaagaaaaggaatggag 142  Q
    |||||||||||||||||||||||||    
T  38855347 aaacatcaaaagaaaaggaatggag 38855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 22157388 - 22157261
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  22157388 actttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaatatcaaaagttttagaatatagttgaagttcta 22157289  T
Q  118 aaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||| ||||||||||    
T  22157288 aaacatcaaaagaaaagaaatggaggga 22157261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 39518537 - 39518422
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||    
T  39518537 actttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaatatcaaaagttttgaaatatagttgaagtttta 39518438  T
Q  118 aaacatcaaaagaaaa 133  Q
    ||||||||||| ||||    
T  39518437 aaacatcaaaaaaaaa 39518422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 32840076 - 32839949
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 119  Q
    |||||||||||||||||||||| |||||||  |||||| |||||| |||||||| || |||||||||||||||  |||  ||||||||||||||||||||    
T  32840076 tttaatagtttattgtgttttctaacaaggacaaacttaagaaaataataataa-ttcactaaaacatcaaaaaatttaaaatatagttgaagttctaaa 32839978  T
Q  120 acatcaaaagaaaaggaatggagggagta 148  Q
    | || ||||||||| ||||||||||||||    
T  32839977 atataaaaagaaaatgaatggagggagta 32839949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 49041011 - 49041107
Alignment:
Q  35 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||||| |||||||||||||| || |||||  ||| ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  49041011 tgtttttcaacaagggtaaacgtgggaaaa--atattaaatatactaaaacatcaaatattttggaacatagttgaagttctaaaacatcaaaagaaaa 49041107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 49319416 - 49319347
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||| |||| ||||  |||| |||||||||||||||||||||||||||||||||| ||||    
T  49319416 ctaaaacatcaaaatttttagaatgaagtttaagttctaaaacatcaaaagaaaaggaatggaggaagta 49319347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 1352029 - 1351996
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  1352029 ctaaaacatcaaaagaaaaggaatggagggagta 1351996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 18997211 - 18997244
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  18997211 ctaaaacatcaaaagaaaaggaatggagggagta 18997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 18999750 - 18999783
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  18999750 ctaaaacatcaaaagaaaaggaatggagggagta 18999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 29014723 - 29014690
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  29014723 ctaaaacatcaaaagaaaaggaatggagggagta 29014690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 36737867 - 36737834
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  36737867 ctaaaacatcaaaagaaaaggaatggagggagta 36737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 38855561 - 38855594
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  38855561 ctaaaacatcaaaagaaaaggaatggagggagta 38855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 39518651 - 39518684
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  39518651 ctaaaacatcaaaagaaaaggaatggagggagta 39518684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 39528993 - 39529026
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  39528993 ctaaaacatcaaaagaaaaggaatggagggagta 39529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 41349404 - 41349371
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  41349404 ctaaaacatcaaaagaaaaggaatggagggagta 41349371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 39807012 - 39806976
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagtt 151  Q
    ||||||||||||||||||||||||| |||||||||||    
T  39807012 ctaaaacatcaaaagaaaaggaatgaagggagtagtt 39806976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 46878980 - 46879012
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  46878980 taaaacatcaaaagaaaaggaatggagggagta 46879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 837455 - 837370
Alignment:
Q  36 gttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacat 123  Q
    ||||| |||||  ||||||||||| |||| |||| ||| | |||||||| ||||||| |||| |||| ||||||||||||||||||||    
T  837455 gtttttcaacacaggtaaacttgaaaaaa-aatattaattatactaaaatatcaaaa-ttttagaatttagttgaagttctaaaacat 837370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 29371571 - 29371536
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29371571 ctaaaacatcaaaagaaaatgaatggagggagtagt 29371536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 32677510 - 32677475
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32677510 ctaaaacatcaaaagaaaatgaatggagggagtagt 32677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 34667662 - 34667762
Alignment:
Q  42 caacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 141  Q
    ||||||||||||| ||||  ||| ||||  |||  | |||||| ||||||  ||||| | || ||||||||| |||||||||||||||||| | ||||||    
T  34667662 caacaagggtaaaattgaataaaaaatatcaaacattctaaaagatcaaatattttgaattaaagttgaagtcctaaaacatcaaaagaaacgaaatgga 34667761  T
Q  142 g 142  Q
    |    
T  34667762 g 34667762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 33837876 - 33838006
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33837876 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 33837975  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  33837976 aaacatcaaaagaaaaggaatggagggagta 33838006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 2508943 - 2509075
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2508943 actttaatagtttactgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 2509042  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||    
T  2509043 aaacatcaaaagaaaaggaatggagggagtagt 2509075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 28379077 - 28378947
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28379077 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 28378978  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||  |||||||||||||    
T  28378977 aaacatcaaaagaaaaataatggagggagta 28378947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 13469652 - 13469777
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13469652 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaattataaatttactaaaatatcaaaagttttggaatatagttgaagttcta 13469751  T
Q  118 aaacatcaaaagaaaaggaatggagg 143  Q
    ||||||||||||||||||||||||||    
T  13469752 aaacatcaaaagaaaaggaatggagg 13469777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 45334423 - 45334554
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  45334423 actttaatagtttattgtgttttccaacaagggtaaacttgaaaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttaaagttcta 45334522  T
Q  118 aaacatcaaaagaaaaggaatggagggagtag 149  Q
    ||||||||||||||||||||||||||||||||    
T  45334523 aaacatcaaaagaaaaggaatggagggagtag 45334554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 25106341 - 25106211
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  25106341 actttaatagtttattgtgttttccatcaagggtaaacttgaaaaaacaatcataaattcactaaaacatcaaaaattttggaatatagttgaagttcta 25106242  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||||    
T  25106241 aaacatcaaaagaaaaggaatggagagagta 25106211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 38495619 - 38495749
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||    
T  38495619 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcaccaaaacatcaaaaattttagaatatagttgaagttcta 38495718  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||| ||||||| ||||||||| ||||    
T  38495719 aaacatcacaagaaaaagaatggaggaagta 38495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 9740115 - 9739979
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||  ||||||||||    
T  9740115 actttaatagtttattgtgtttttcaacaaggataaacttgagaaagcaataataaattcagtaaaacatcaaaagttttgaaatatacatgaagttcta 9740016  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagttgtt 154  Q
    ||||||||||||||||||||||||||||||| |||||    
T  9740015 aaacatcaaaagaaaaggaatggagggagtatttgtt 9739979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 27793345 - 27793468
Alignment:
Q  25 tagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 124  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  27793345 tagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacattaaaagttttggaatatagttgaagatctaaaacatc 27793444  T
Q  125 aaaagaaaaggaatggagggagta 148  Q
    ||||||||| ||||||| ||||||    
T  27793445 aaaagaaaatgaatggaaggagta 27793468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 32183630 - 32183759
Alignment:
Q  21 ttaatagtttat--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaa 118  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||  |||||||||||||||||||||||||    
T  32183630 ttaatagtttatggtgtgttttccaacaagggtaaacttgggaaaaaaatattaaatatactaaaacatcaaatattttggaatatagttgaagttctaa 32183729  T
Q  119 aacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||  |||| ||||||||    
T  32183730 aacatcaaaagaaaaaaaatgaagggagta 32183759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 2626385 - 2626472
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaac-aataataaatttactaaaacatcaaaagttttggaatat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  2626385 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaaataataaattcactaaaacatcaaaagttttggaatat 2626472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 27024502 - 27024433
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  27024502 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagta 27024433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 25978969 - 25979036
Alignment:
Q  81 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||| |||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  25978969 aaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggagggagta 25979036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 8235276 - 8235162
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||||  ||| |||| ||||  |  |||||||||||| |||||| |||| | ||||||| ||||||||||||||||||    
T  8235276 tgtgtttttcaacaagggtaaaattgaagaaa-aatattaaaaatcttaaaacatcaaatgttttgaaataaaattgaagtcctaaaacatcaaaagaaa 8235178  T
Q  133 aggaatggagggagta 148  Q
    |  |||||||||||||    
T  8235177 ataaatggagggagta 8235162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 3203413 - 3203492
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 113  Q
    |||||||| |||||| | |||||||||||||| |||| ||||| |||||||||||||||  ||||  ||||||||||||||    
T  3203413 tgtgtttttcaacaaagataaacttgagaaaa-aatattaaatatactaaaacatcaaatattttaaaatatagttgaagt 3203492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 2626667 - 2626714
Alignment:
Q  86 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||    
T  2626667 atcaaaagttttggaatatagttgaagttctaaaatataaaaaaaaaa 2626714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 25106455 - 25106488
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  25106455 ctaaaacatcaaaagaaaaggaatggagggagta 25106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 27027655 - 27027688
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  27027655 ctaaaacatcaaaagaaaaggaatggagggagta 27027688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 28379191 - 28379224
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  28379191 ctaaaacatcaaaagaaaaggaatggagggagta 28379224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 33837762 - 33837729
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  33837762 ctaaaacatcaaaagaaaaggaatggagggagta 33837729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 45334309 - 45334276
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  45334309 ctaaaacatcaaaagaaaaggaatggagggagta 45334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 9740231 - 9740263
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  9740231 taaaacatcaaaagaaaaggaatggagggagta 9740263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 38495505 - 38495472
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| ||||||||||||||    
T  38495505 ctaaaacatcaaaagaaaatgaatggagggagta 38495472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 13469540 - 13469508
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||| ||||||    
T  13469540 taaaacatcaaaagaaaaggaatggaaggagta 13469508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 27312263 - 27312393
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  27312263 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaatatagttgaagttcta 27312362  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  27312363 aaacatcaaaagaaaaggaatggagggagta 27312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 32274564 - 32274434
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  32274564 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 32274465  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  32274464 aaacatcaaaagaaaaggaatggagggagta 32274434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 5004012 - 5003880
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  5004012 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttcta 5003913  T
Q  118 aaacatcaaaagaaaaggaatggagggagtagt 150  Q
    ||||||||||| |||| |||||||  |||||||    
T  5003912 aaacatcaaaaaaaaatgaatggaatgagtagt 5003880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 8504849 - 8504977
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  8504849 actttaatagtttattgtgtttttcaacaagggtaaacctgagaaaataataataaattcactaaaacatcaaaagttttgaaatatagttgaagttcta 8504948  T
Q  118 aaacatcaaaagaaaaggaatggagggag 146  Q
    |||||||||||||||| ||||||||||||    
T  8504949 aaacatcaaaagaaaatgaatggagggag 8504977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 12174802 - 12174700
Alignment:
Q  46 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  12174802 aagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatttaaagttctaaaacattaaaagaaaaggaatggaggga 12174703  T
Q  146 gta 148  Q
    |||    
T  12174702 gta 12174700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 29452691 - 29452820
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaa-taataaatttactaaaacatcaaaagttttggaatatagttgaagttctaa 118  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |  ||| ||||||||||||||||||||    
T  29452691 tttaatagtttatggtgttttccaacaagtgtaaacttgagaaaacaagtaataaattcactaaaacatcaagaaatttagaatatagttgaagttctaa 29452790  T
Q  119 aacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||| |||||||| |||||||||||||    
T  29452791 aacatcagaagaaaagaaatggagggagta 29452820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 18742062 - 18741947
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||    
T  18742062 tgtgtttttcaacaagggtaaatttgagaatacaatattaaatatactaaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaa 18741963  T
Q  133 aggaatggagggagta 148  Q
    || |||||||||||||    
T  18741962 agaaatggagggagta 18741947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 31171139 - 31171267
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 119  Q
    ||||||||||||  ||||||||||| || | |||||||||||||||||||||||||| |||| |||||| || ||||||||||| | ||||| |||||||    
T  31171139 tttaatagtttaaggtgttttccaataaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatacatttgaatttctaaa 31171238  T
Q  120 acatcaaaagaaaaggaatggagggagta 148  Q
     |||||||||||||| |||||||||||||    
T  31171239 tcatcaaaagaaaagaaatggagggagta 31171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 7156413 - 7156502
Alignment:
Q  59 agaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  7156413 agaaaacaataataaattcactaaaacatctaaagttttggaatatagttgattgtctaaaacatcaaaagaaaagaaatggagggagta 7156502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 2543211 - 2543142
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacat 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2543211 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacat 2543142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 29302500 - 29302550
Alignment:
Q  100 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302500 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtagt 29302550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 8504766 - 8504731
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  8504766 ctaaaacatcaaaagaaaaggaatggagggagtagt 8504731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 27312147 - 27312114
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  27312147 ctaaaacatcaaaagaaaaggaatggagggagta 27312114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 32274678 - 32274712
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtag 149  Q
    ||||||||||||||||||| |||||||||||||||    
T  32274678 ctaaaacatcaaaagaaaatgaatggagggagtag 32274712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 2543325 - 2543358
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| ||||||||||||||    
T  2543325 ctaaaacatcaaaagaaaacgaatggagggagta 2543358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 18742191 - 18742223
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| |||||||||||||    
T  18742191 taaaacatcaaaagaaaagaaatggagggagta 18742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 12399093 - 12399223
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  12399093 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 12399192  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  12399193 aaacatcaaaagaaaaggaatggagggagta 12399223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 34208668 - 34208538
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  34208668 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 34208569  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  34208568 aaacatcaaaagaaaaggaatggagggagta 34208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 29875084 - 29874954
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  29875084 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaatatagttgaagttcta 29874985  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||||||||||||    
T  29874984 aaacatcaaaagaaaaagaatggagggagta 29874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 23090428 - 23090298
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||    
T  23090428 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaatacagttgaagttcta 23090329  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  23090328 aaacatcaaaagaaaaggaatggagggagta 23090298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4145824 - 4145694
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  4145824 actttaatagtttattgtgttttccaacaagggtaaacttaagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttaaagttcta 4145725  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||||    
T  4145724 aaacatcaaaagaaaaggaatggagcgagta 4145694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4695309 - 4695439
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  4695309 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgaaatatagttgaagttcta 4695408  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||| |||||||||||||||||| ||||||||    
T  4695409 aaaaatcaaaagaaaaggaatgaagggagta 4695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 3077727 - 3077597
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||| |||||    
T  3077727 actttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataacaaattcactaaaacatcaaaagttttaaaatatagttgaaattcta 3077628  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||||||||||||    
T  3077627 aaacatcaaaagaaaatgaatggagggagta 3077597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 42757957 - 42758072
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  42757957 actttaatagtttatcgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaaaatagttgaagttcta 42758056  T
Q  118 aaacatcaaaagaaaa 133  Q
    |||||| |||| ||||    
T  42758057 aaacataaaaaaaaaa 42758072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 41610579 - 41610706
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    ||||||||  |||||||||||| |||   ||| | || |||| || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  41610579 tgtgttttttaacaagggtaaaattggataaaaagtattaaaatttctaaaacatcaaaagttttggaataaagtttaagttctaaaacatcaaaagaaa 41610678  T
Q  133 aggaatggagggagtagttgttgtaata 160  Q
    || ||||||| |||||||||| ||||||    
T  41610679 agaaatggagagagtagttgtagtaata 41610706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 12096365 - 12096466
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatt-tactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 131  Q
    |||||||| ||||||| ||| ||||||||||| |||| |||| | || |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  12096365 tgtgtttttcaacaagagtacacttgagaaaagaatattaaaatatattaaaacatcaaatgttttggaatatagttgaagtcctaaaacatcaaaagaa 12096464  T
Q  132 aa 133  Q
    ||    
T  12096465 aa 12096466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 42793109 - 42793040
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||    
T  42793109 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagtgagta 42793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 22646056 - 22646121
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaa 83  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||    
T  22646056 actttaatagtttatggtgtttttcaacaaggttaaacttgagaaaacaataataaattcactaaa 22646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 4434847 - 4434783
Alignment:
Q  81 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    |||||||||||  | ||| |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  4434847 aaaacatcaaatatcttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggaggga 4434783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 12398979 - 12398946
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  12398979 ctaaaacatcaaaagaaaaggaatggagggagta 12398946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 29875198 - 29875231
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  29875198 ctaaaacatcaaaagaaaaggaatggagggagta 29875231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 42757838 - 42757805
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  42757838 ctaaaacatcaaaagaaaaggaatggagggagta 42757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 42793562 - 42793595
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  42793562 ctaaaacatcaaaagaaaaggaatggagggagta 42793595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 23090543 - 23090575
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  23090543 taaaacatcaaaagaaaaggaatggagggagta 23090575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 41610405 - 41610373
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  41610405 taaaacatcaaaagaaaaggaatggagggagta 41610373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 19574795 - 19574686
Alignment:
Q  37 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaagga 136  Q
    |||| |||||||||| | |||| ||||| |||| ||||| || |||||||| |||  ||||| ||| || ||||||| |||||||||||||||| ||  |    
T  19574795 tttttcaacaagggtgaccttgggaaaa-aatattaaatatattaaaacattaaatattttgaaatttaattgaagtcctaaaacatcaaaagacaa-aa 19574698  T
Q  137 atggagggagta 148  Q
    ||||||||||||    
T  19574697 atggagggagta 19574686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 594328 - 594362
Alignment:
Q  99 gaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||||||||||||||| ||||||||||||||||||    
T  594328 gaatatagttgaagttttaaaacatcaaaagaaaa 594362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 8718094 - 8718028
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    |||||||||||||  ||||| |||| ||||||| |  ||||| ||||||||||||| ||||||||||    
T  8718094 ctaaaacatcaaatattttgaaataaagttgaaatcttaaaatatcaaaagaaaagaaatggaggga 8718028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 22528117 - 22528023
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaa 127  Q
    |||||||| |||||| |||||| |||  | || | || ||||| |||||||||||||||  ||||||| |||| ||||||| |||||| ||||||    
T  22528117 tgtgtttttcaacaaaggtaaatttggaataaaattattaaatgtactaaaacatcaaatattttggagtataattgaagtcctaaaatatcaaa 22528023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 34208782 - 34208815
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||| |||||||||||||||||||    
T  34208782 ctaaaacatcaaaaaaaaaggaatggagggagta 34208815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 4817396 - 4817269
Alignment:
Q  21 ttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4817396 ttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaatgataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaa 4817297  T
Q  121 catcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||    
T  4817296 catcaaaagaaaaggaatggagggagta 4817269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 46220389 - 46220259
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  46220389 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 46220290  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||| |||||||||    
T  46220289 aaacatcaaaagaaaaggaatagagggagta 46220259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 47669249 - 47669119
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  47669249 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaatatagttgaagttcta 47669150  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  47669149 aaacatcaaaagaaaaggaatggagggagta 47669119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 18126978 - 18126851
Alignment:
Q  21 ttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaa 120  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  18126978 ttaatagtttgttgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttctaaaa 18126879  T
Q  121 catcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||    
T  18126878 catcaaaagaaaaggaatggagggagta 18126851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 10737848 - 10737978
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  10737848 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttcta 10737947  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||| ||||||||||||||| ||||||||    
T  10737948 aaacattaaaagaaaaggaatgaagggagta 10737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 9831631 - 9831503
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  9831631 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaataataacaaattcactaaaacatcaaaagttttggaatatagttgaaattctaaa 9831532  T
Q  120 acatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||    
T  9831531 acatcaaaagaaaaggaatggagggagta 9831503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4055614 - 4055484
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||| |||  |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  4055614 actttaacagtgaattgtgttttccaataagggtaaacttgagaaaacaataattaattcactaaaacatcaaaagttttggaatatagttgaagttcta 4055515  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  4055514 aaacatcaaaagaaaaggaatggagggagta 4055484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 48564947 - 48564818
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||    
T  48564947 actttaatagtttattgtgttttccatcaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaatttttggaatatagttgaagtttta 48564848  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||| ||||||||| |||||||||||||    
T  48564847 aaacatc-aaagaaaagtaatggagggagta 48564818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 3384742 - 3384870
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | |||||||| ||||||    
T  3384742 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttg--aaatagttgaggttcta 3384839  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||| ||||||||    
T  3384840 aaacatcaaaagaaaaagaatgaagggagta 3384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 8889572 - 8889457
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8889572 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 8889473  T
Q  118 aaacatcaaaagaaaa 133  Q
    |||||| |||| ||||    
T  8889472 aaacataaaaaaaaaa 8889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 7414337 - 7414208
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||  ||||||||||||||||||    
T  7414337 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttaaaatatagttgaagttcta 7414238  T
Q  118 aaacatcaaaagaaaaggaatggagggagt 147  Q
    ||||||||||| |||| |||||||||||||    
T  7414237 aaacatcaaaaaaaaatgaatggagggagt 7414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 1236205 - 1236308
Alignment:
Q  46 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  1236205 aagggtaaacttgagaaaacaataataaattcactaaaccatcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaatgaatggaggga 1236304  T
Q  146 gtag 149  Q
    ||||    
T  1236305 gtag 1236308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 1749521 - 1749600
Alignment:
Q  69 aataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||| ||||    
T  1749521 aataaattcactaaaacatcaaaagttttggtatataattaaagttctaaaacatcaaaagaaaaggaatagaggaagta 1749600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 39241282 - 39241172
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaa-cttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 116  Q
    ||||||||||||||| ||||||| ||||||| ||||| ||||| | |||||||||||||| ||| ||||| ||||||||||| |||||||||||| ||||    
T  39241282 actttaatagtttatggtgtttttcaacaagagtaaaacttgatacaacaataataaattcactgaaacaacaaaagttttgaaatatagttgaa-ttct 39241184  T
Q  117 aaaacatcaaaa 128  Q
    ||||||| ||||    
T  39241183 aaaacattaaaa 39241172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 33020275 - 33020206
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||    
T  33020275 ctaaaacatcaaaagttttggaaaaaagtttaagctctaaaacatcaaaagaaaaggaatggagggagta 33020206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 26842552 - 26842462
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca 125  Q
    |||||||| |||||||| ||||||||| ||||  ||| ||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  26842552 tgtgtttttcaacaaggataaacttgaaaaaa--atattaaatatactaaaacatcaaatattttgaaatatagttgaagttctaaaacatca 26842462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 33846820 - 33846935
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 131  Q
    ||||||||  |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||    
T  33846820 tgtgttttttaacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaa 33846919  T
Q  132 aaggaatggagggagta 148  Q
    ||  |||||||||||||    
T  33846920 aa-aaatggagggagta 33846935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 33947158 - 33947043
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 131  Q
    ||||||||  |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||    
T  33947158 tgtgttttttaacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaa 33947059  T
Q  132 aaggaatggagggagta 148  Q
    ||  |||||||||||||    
T  33947058 aa-aaatggagggagta 33947043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 37875920 - 37875849
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaa 91  Q
    ||||||||| |  ||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||||    
T  37875920 tttaatagtatggtgtatttttcaacaaggataaacttgagaaaacaacattaaatatactaaaacatcaaa 37875849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 47669363 - 47669398
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  47669363 ctaaaacatcaaaagaaaaggaatggagggagtagt 47669398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 10737734 - 10737701
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  10737734 ctaaaacatcaaaagaaaaggaatggagggagta 10737701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 46220503 - 46220536
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  46220503 ctaaaacatcaaaagaaaaggaatggagggagta 46220536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 1236103 - 1236071
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagt 147  Q
    |||||||||||||||||||||||||||||||||    
T  1236103 ctaaaacatcaaaagaaaaggaatggagggagt 1236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 8889687 - 8889723
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagtt 151  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8889687 ctaaaacatcaaaataaaaggaatggagggagtagtt 8889723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 148
Target Start/End: Original strand, 48565063 - 48565094
Alignment:
Q  117 aaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||    
T  48565063 aaaacatcaaaagaaaaggaatggagggagta 48565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 49112439 - 49112535
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||   ||||||||  ||||| |||||||||||||||  ||||  ||||||||| |||||    ||||||||||||||    
T  49112439 tgtgtttttcaacaagggtaaatttagaaaaacaatgttaaatatactaaaacatcaaatattttaaaatatagttaaagtt----aacatcaaaagaaa 49112534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 9831747 - 9831777
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggaggga 145  Q
    |||||||||||||||||||||||||||||||    
T  9831747 ctaaaacatcaaaagaaaaggaatggaggga 9831777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 33023428 - 33023461
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||| ||||||||||||||||||||||||||    
T  33023428 ctaaaacgtcaaaagaaaaggaatggagggagta 33023461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 37875760 - 37875727
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||| |||||||||||||    
T  37875760 ctaaaacatcaaaagaaaagaaatggagggagta 37875727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 15233885 - 15233757
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  15233885 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 15233786  T
Q  118 aaacatcaaaagaaaaggaatggagggag 146  Q
    ||||||||||||||||||||| |||||||    
T  15233785 aaacatcaaaagaaaaggaatagagggag 15233757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 43040996 - 43041126
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  43040996 actttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagtttta 43041095  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  43041096 aaacatcaaaagaaaaggaatggagggagta 43041126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 35793054 - 35793183
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35793054 actttaatagtttattgtgttttccaacaagggtaaacttga-aaaacaataataaattctctaaaacatcaaaagttttggaatatagttgaagttcta 35793152  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||||||||||||    
T  35793153 aaacatcaaaagaaaaagaatggagggagta 35793183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 41252545 - 41252415
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  41252545 actttaatagtttattgtattttccaacaaggataaacttgagaacacaataataaattcactaaaacatcaaaagttttggaatatatttgaagttcta 41252446  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||| ||||||||||||||||||||||||    
T  41252445 aaacataaaaagaaaaggaatggagggagta 41252415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 31296213 - 31296083
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  31296213 actttaatagtttattgtgtttttcaacaaaggtaaatttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttcta 31296114  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||||| ||||||    
T  31296113 aaacatcaaaagaaaaagaatggaaggagta 31296083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 44104699 - 44104833
Alignment:
Q  21 ttaatagtttattgtgttttccaacaa-------gggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 113  Q
    |||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  44104699 ttaatagtttattgtgttttccaacaatttataagggtaaacttgagaaaataataataaattcactaaaacatcaaaagttttgaaatatagttgaagt 44104798  T
Q  114 tctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||| ||||||||||    
T  44104799 tctaaaacatcaaaagaaaaggaacggagggagta 44104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 41643024 - 41642891
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaa--tatagttgaagttc 115  Q
    ||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| |||    
T  41643024 actttaatagtttatggtgttttccagaaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatagttgaaattc 41642925  T
Q  116 t-aaaacatcaaaagaaaaggaatggagggagta 148  Q
    | |||||||||||||||||| |||||||||||||    
T  41642924 taaaaacatcaaaagaaaagaaatggagggagta 41642891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 31903527 - 31903641
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  31903527 actttaatagtttatggtgttttccaataagggtaaact-gataaaacaataataaatttactaaaacatcaaaaaatttggaatatatttgaagttcta 31903625  T
Q  118 aaacatcaaaagaaaa 133  Q
    ||||||||||| ||||    
T  31903626 aaacatcaaaaaaaaa 31903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 10118660 - 10118729
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||    
T  10118660 ctaaaacatcaaaagttttggaataaagtttaagctctaaaatatcaaaagaaaaggaatggagggagta 10118729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 21727801 - 21727684
Alignment:
Q  19 ctttaatagttt-attgtgttttc--caacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttc 115  Q
    |||||||||||| ||||||||||   ||||||||||||| ||| | ||| |||| ||  | ||| |||||||||||  ||||| ||||||||||||||||    
T  21727801 ctttaatagttttattgtgtttttttcaacaagggtaaatttggggaaaaaatattagttataccaaaacatcaaatattttgaaatatagttgaagttc 21727702  T
Q  116 taaaacatcaaaagaaaa 133  Q
    ||||||||||||||||||    
T  21727701 taaaacatcaaaagaaaa 21727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 10112372 - 10112339
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  10112372 ctaaaacatcaaaagaaaaggaatggagggagta 10112339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 15233999 - 15234032
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  15233999 ctaaaacatcaaaagaaaaggaatggagggagta 15234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 36963200 - 36963131
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||  ||||| |||| |||| || ||||||||||| |||||||||||||| ||| |||||    
T  36963200 ctaaaacatcaaattttttgaaataaagtttaaattctaaaacattaaaagaaaaggaatagagcgagta 36963131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 43040882 - 43040849
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  43040882 ctaaaacatcaaaagaaaaggaatggagggagta 43040849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 44104578 - 44104546
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  44104578 taaaacatcaaaagaaaaggaatggagggagta 44104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 45590872 - 45590742
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  45590872 actttaatagtttattgtgttttccaacaaaggtaaacttgataaaacaataatgaattcactaaaacatcaaaagttttagaatatagttgaagttcta 45590773  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||||||||||||    
T  45590772 aaacatcaaaagaaaatgaatggagggagta 45590742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 34334462 - 34334342
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  34334462 actttaatagtttattgtgtttttcaacaagggtaaacttgagaagacaataataaattcactaaagcatcaaaagttttggaatatagttgaagttcta 34334363  T
Q  118 aaacatcaaaagaaaaggaat 138  Q
    |||||||||||||||||||||    
T  34334362 aaacatcaaaagaaaaggaat 34334342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 8955923 - 8956053
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  8955923 actttaataatttattgtgttttccaataagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttgtaatatagttgaagttcta 8956022  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||| |||||||||||||||||||    
T  8956023 aaacatcaaaaaaaaaggaatggagggagta 8956053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 33288564 - 33288682
Alignment:
Q  30 tattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaag 129  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  33288564 tattgtgttttccaacatgggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatataattgaagttctaaaatatcaaaag 33288663  T
Q  130 aaaaggaatggagggagta 148  Q
    ||||| |||||||||||||    
T  33288664 aaaagaaatggagggagta 33288682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 49162231 - 49162108
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||     
T  49162231 actttaatagtttatggtgttttccaacaagg-taaaattgagaaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttctg 49162133  T
Q  118 aaacatcaaaagaaaaggaatggag 142  Q
    |||||||||||||||| ||||||||    
T  49162132 aaacatcaaaagaaaatgaatggag 49162108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 30469353 - 30469445
Alignment:
Q  56 ttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30469353 ttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgaagggagta 30469445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 39482002 - 39481906
Alignment:
Q  49 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  39482002 ggtaaacctgagaaaacaataataaatttactaaaacatcaaaagttttggaaaatagttgaagttctaaaacatcaaaagaaaagaaatggaggga 39481906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 18835837 - 18835705
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattt--actaaaacatcaaaagttttggaatatagttgaagttc 115  Q
    |||||||||||||||  ||||||| ||||||| |||| ||||||||||||||||| || |  ||||||||||| ||||||||||||||||||||||||||    
T  18835837 actttaatagtttatgatgttttctaacaaggataaatttgagaaaacaataatatatattcactaaaacatcgaaagttttggaatatagttgaagttc 18835738  T
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||  |||| ||||||||    
T  18835737 taaaacatcaaaagaaaataaatgaagggagta 18835705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 50774207 - 50774325
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaa-----catcaaaagttttggaatatagttgaagtt 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||      ||||||||||||| ||||||||| |||||    
T  50774207 tttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaatactgtatcaaaagttttgaaatatagttaaagtt 50774306  T
Q  115 ctaaaacatcaaaagaaaa 133  Q
    |||||||||||||| ||||    
T  50774307 ctaaaacatcaaaaaaaaa 50774325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 19256255 - 19256186
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  19256255 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagta 19256186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 26025685 - 26025784
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||  |||||  |||||||||||||||||||| ||||||||||||||||||    
T  26025685 tgtgtttttcaacaagggtaaacttgggaaaa-aatattaaatatactaaaatgtcaaatattttggaatatagttgaagtcctaaaacatcaaaagaaa 26025783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 36016329 - 36016279
Alignment:
Q  98 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016329 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 36016279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 36968407 - 36968353
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36968407 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaaaaaaa 36968353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 36971176 - 36971115
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaa 82  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  36971176 tttaatagtttattgtgttttccaacaa-ggtaaacttcagaaaacaataataaattcactaa 36971115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 33109063 - 33109163
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    ||||||||  ||||||| ||||||| |||||| |||| ||||| ||||||||||||||   ||||  |||||||||||||| ||||||||| ||||||||    
T  33109063 tgtgttttttaacaaggataaacttaagaaaaaaatattaaatatactaaaacatcaattattttaaaatatagttgaagtcctaaaacattaaaagaaa 33109162  T
Q  133 a 133  Q
    |    
T  33109163 a 33109163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 19257103 - 19257139
Alignment:
Q  114 tctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    |||||||||||||||||||||||||||||||||||||    
T  19257103 tctaaaacatcaaaagaaaaggaatggagggagtagt 19257139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 45590986 - 45591021
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtagt 150  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45590986 ctaaaacatcaaaagaaaatgaatggagggagtagt 45591021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 8955809 - 8955779
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggaggga 145  Q
    |||||||||||||||||||||||||||||||    
T  8955809 ctaaaacatcaaaagaaaaggaatggaggga 8955779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 49162332 - 49162365
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||| |||||||||||||||    
T  49162332 ctaaaacatcaaaagaaagggaatggagggagta 49162365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 39482106 - 39482138
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagt 147  Q
    |||||||||||||||||||| ||||||||||||    
T  39482106 ctaaaacatcaaaagaaaagaaatggagggagt 39482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 44750 - 44619
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||     
T  44750 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacctcaaaagttttggaatatagttgaagttctc 44651  T
Q  118 aaacatca-aaagaaaaggaatggagggagta 148  Q
    |||||||| |||||||||||||| ||||||||    
T  44650 aaacatcagaaagaaaaggaatgaagggagta 44619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University