View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4006_low_8 (Length: 243)
Name: NF4006_low_8
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4006_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 26723338 - 26723476
Alignment:
| Q |
94 |
attacattacatctatcattttattctttttatttttctctctctagtggtagattgaatattggatgtctaggaattatttttctat-gaaaaacnnnn |
192 |
Q |
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| T |
26723338 |
attacattacatctatcattttattctttttatttctttctctctagtggtagattgaatattggatgtctaggaattatttttctatagaaaaacattt |
26723437 |
T |
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| Q |
193 |
nnnnnccggttaattatccatgaacacccttttttccta |
231 |
Q |
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| T |
26723438 |
tttttccggctaattatccatgaacacccttttttccta |
26723476 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 38645703 - 38645776
Alignment:
| Q |
102 |
acatctatcattttattctttttatttttctctctctagtggtagattgaatattggatgtctaggaattattt |
175 |
Q |
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| T |
38645703 |
acatctattattctatattttgtatttctttctctctagtggtagattgaattttgggtgtttaagaattattt |
38645776 |
T |
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