View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4006_low_9 (Length: 236)
Name: NF4006_low_9
Description: NF4006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4006_low_9 |
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| [»] scaffold1364 (1 HSPs) |
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| [»] scaffold0351 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 33600233 - 33600372
Alignment:
| Q |
22 |
gataagctagcacaagacttcaaatctctccaccacaaagaagtatttttatttatcatctccaatctatgacaatatttttgctttagaaccaatttcc |
121 |
Q |
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| T |
33600233 |
gataagctaacacaagacttcaaatctctccaccagaaagaagtattcttatttatcatctccaatctatgacaatatttttgctttagaaccaatttcc |
33600332 |
T |
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| Q |
122 |
atgattaatcagtctatatcttcactgtccaccaccattt |
161 |
Q |
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| T |
33600333 |
ataattaatcagtctatatcttcactgtccaccaccattt |
33600372 |
T |
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Target: scaffold1364 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold1364
Description:
Target: scaffold1364; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 541 - 719
Alignment:
| Q |
23 |
ataagctagcacaagacttcaaatctctccaccacaaagaagtatttttatttatcatctccaatctatgacaatatttttgctttagaaccaatttcca |
122 |
Q |
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| T |
541 |
ataaactaacacaagacttcaaatctctccaccacagagaagtattcttatttatcatctccaatctatgaccatatttttgctttagaaccaatttcaa |
640 |
T |
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| Q |
123 |
tgattaatcagtctatatcttcactgtccaccaccatttaccaagaacggctagattaaagagtctcaaattccaaattc |
202 |
Q |
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| T |
641 |
t-attaatcggtatgtatcttcactctccaccaccatttaccaagaaggactaggttaaagaatctcaaattcctaattc |
719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 11631 - 11731
Alignment:
| Q |
20 |
ccgataagctagcacaagacttcaaatctctccaccacaaagaagtatttttatttatcatctccaatctatgacaatatttttgctttagaaccaattt |
119 |
Q |
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| T |
11631 |
ccgataaactaacacaagacttcaaatctctccaccacaaagaagtattcttatttaacatctccagtctatgaccatatttttgctttagaaccaattt |
11730 |
T |
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| Q |
120 |
c |
120 |
Q |
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| T |
11731 |
c |
11731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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