View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_high_14 (Length: 228)
Name: NF4007_high_14
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 6350600 - 6350399
Alignment:
| Q |
14 |
atcttttgactaagaggccactggttgatacatttgaaataaatcatcaattttatttttaaacaataattttctctctatttggccctaacatatatat |
113 |
Q |
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| T |
6350600 |
atcttttgactaagaggccactggttgatacatttgaaataaaccatcaatttaatttttaaacaataattttctctctatttggccctaacata--tat |
6350503 |
T |
|
| Q |
114 |
aaatataagacttactacctcaaataacccatatattttggacgaggtattaaaataggcaatatnnnnnnncacaatattcggtgttgtgccattcatt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6350502 |
aaatataagacttactacctcaaataacccatatattttagacgaggtattaaaataggcaatataaaaaaacacaatattcggtgttgtgccattcatt |
6350403 |
T |
|
| Q |
214 |
tctt |
217 |
Q |
| |
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|||| |
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| T |
6350402 |
tctt |
6350399 |
T |
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