View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_high_15 (Length: 203)
Name: NF4007_high_15
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 44309312 - 44309168
Alignment:
| Q |
20 |
acaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaaaaacaataacccttatcgtcttggcttcccatatttgaaa |
119 |
Q |
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| T |
44309312 |
acaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaaaaacaataacccttatggtcttagcttcccatatttgaaa |
44309213 |
T |
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| Q |
120 |
attgctacaaagctgatccaacttcaatatcgaaatcaaatcctg |
164 |
Q |
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| T |
44309212 |
attgctacaaagctgatccaacttcaatatcgaaatcaaatcctg |
44309168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 8673849 - 8673993
Alignment:
| Q |
20 |
acaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaaaaacaataacccttatcgtcttggcttcccatatttgaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673849 |
acaacaccgatggccacctctgccatatttgaaaaagttgaaacacttgaatgaagagaaaaacaataacccttatcgtcttggcttcccatatttgaaa |
8673948 |
T |
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| Q |
120 |
attgctacaaagctgatccaacttcaatatcgaaatcaaatcctg |
164 |
Q |
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| T |
8673949 |
attgctacaaagctgatccaacttcaatatccaaatcaaatcctg |
8673993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 44193779 - 44193688
Alignment:
| Q |
55 |
agttgaaacacatgaatgaagagaaaaacaataacccttatcgtcttggcttcccatatttgaaaattgctacaaagctgatccaacttcaa |
146 |
Q |
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| T |
44193779 |
agttgaaacgcatgaatgaagagaagaacaataacccttaccgttttggcttcccatatttgagaattgctacaaagctcttccaacttcaa |
44193688 |
T |
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