View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_high_9 (Length: 278)
Name: NF4007_high_9
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 5939821 - 5939582
Alignment:
| Q |
21 |
taagggcgaagtgttttaagggaaatcataacgatccaaggtgggaaaagaatttcacttctcgtcatccttctttaatagtggaacttgtataatctag |
120 |
Q |
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| T |
5939821 |
taagggcgaagtgttttaagggaaatcataacgatccaaggcgggaaaagaatttcacttttcgtcatccttctttaatagtggaacttgtataatctag |
5939722 |
T |
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| Q |
121 |
ttcttacctcttataaaccaaatagaacacaataattgacattggacatggcataaactaagaaattccattctctctacgtcaaatttaataaatctac |
220 |
Q |
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| T |
5939721 |
ttcttacctcttataaaccaaatagaacacaataattgacattggatatagcataaactaagaaattccattctctctacgtcaaatttaataaatctac |
5939622 |
T |
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| Q |
221 |
gtcaaatttatcattaagagttacaaaaaattgtaataga |
260 |
Q |
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| T |
5939621 |
gtcaaatttatcattaagagttacatataattgtaataga |
5939582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 5973682 - 5973523
Alignment:
| Q |
58 |
aaggtgggaaaagaatttcacttctcgtcatccttctttaatagtggaacttgtataatctagttcttacctcttataaaccaaatagaacacaataatt |
157 |
Q |
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||||||||||||||||||| |||| | ||||||||||| |||| |||||||||||| ||| |||||||||||| ||||||| ||||||| ||||||||| |
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| T |
5973682 |
aaggtgggaaaagaatttctcttcacatcatccttcttcaataatggaacttgtatgatccggttcttacctctaataaacctaatagaatacaataatt |
5973583 |
T |
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| Q |
158 |
gacattggacatggcataaactaagaaattccattctctctacgtcaaatttaataaatc |
217 |
Q |
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| T |
5973582 |
gacattggacatggcttaaactaagaaattccattccctctacgtcaaatttagtaaatc |
5973523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 5911112 - 5910997
Alignment:
| Q |
102 |
tggaacttgtataatctagttcttacctcttataaaccaaatagaacacaataattgacattggacatggcataaactaagaaattccattctctctacg |
201 |
Q |
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|||||||||||| | | ||||||||||||| ||||| | | || | | || || | |||||||||||||| ||||| |||||||||||||||||| || |
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| T |
5911112 |
tggaacttgtatgaaccagttcttacctctaataaaactactaatatataagaactaacattggacatggcttaaacaaagaaattccattctctccact |
5911013 |
T |
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| Q |
202 |
tcaaatttaataaatc |
217 |
Q |
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||||| ||| |||||| |
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| T |
5911012 |
tcaaacttagtaaatc |
5910997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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