View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_low_11 (Length: 277)
Name: NF4007_low_11
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 8079985 - 8079742
Alignment:
| Q |
20 |
aaacaatataaagaaacgggtcacaaaaatgcatcaatattttatattagcttgagaaattgtgaatgccacatcctatactttgactatatgttgcata |
119 |
Q |
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| T |
8079985 |
aaacaatataaagaaacgggtcacaaaaatgcatcaatattttatattagcttgagaaattgtgaatgccacatcctatactttgactatatgttgcata |
8079886 |
T |
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| Q |
120 |
tttaagaaatgtcctcgtattcaatgcacaaaggttttaaatagagatatg-tgttcaacttcaatctatttattcatttgtttttagtctaatttgatg |
218 |
Q |
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| T |
8079885 |
tttaagaaatgtcctcgtattcaatgcacagaggttttaaatagagacgtgctgttcaacttcaatctatttattcatttgtttttagtctaatatgatg |
8079786 |
T |
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| Q |
219 |
a--tctctttatattcgaacagtgctatcacatgtgatggtttt |
260 |
Q |
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| T |
8079785 |
atctctcttcatattcgaacagtgctattacatgtgatgatttt |
8079742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 8067916 - 8067989
Alignment:
| Q |
48 |
atgcatcaatattttatattagcttgagaaattgtgaatgccacatcctatactttgactatatgttgcatatttaa |
124 |
Q |
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| T |
8067916 |
atgcatcaatattttatattagctt--gaaattatgaatgccacat-ctatactttgactaaatgttggatatttaa |
8067989 |
T |
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