View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_low_14 (Length: 234)
Name: NF4007_low_14
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 50351 - 50146
Alignment:
| Q |
10 |
caatgagaggcccaacccaaaaaacccattggtcagtccaatttccactaaccaaagcaggcccaaaagatcttgctggcttcatggaagcacctgcaaa |
109 |
Q |
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| T |
50351 |
caatgagaggcccaacccaaaaaatccattggtcagtccaatttccactaaccaaagcaggcccaaaagatcttgctggattcatggaagcacctgcaaa |
50252 |
T |
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| Q |
110 |
agccccgccagccaagatgttagcccctacaacaaatccaaccaaaatcgggccaacgccagcatattctcctttctttggattaaccatagttgcatac |
209 |
Q |
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| T |
50251 |
agccccgccagccaagatgttagcccctacaacaaatccaatcaaaattgggccaagtccagcaaatcctcctttctttggatcaaccatagttgcatac |
50152 |
T |
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| Q |
210 |
acagtg |
215 |
Q |
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|||||| |
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| T |
50151 |
acagtg |
50146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 45715 - 45521
Alignment:
| Q |
21 |
ccaacccaaaaaacccattggtcagtccaatttccactaaccaaagcaggcccaaaagatcttgctggcttcatggaagcacctgcaaaagccccgccag |
120 |
Q |
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||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| | | ||||||||| |||| |
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| T |
45715 |
ccaacccaataaacccaatgatctgtccaatttccactaaccaaagcaggcccaaaagatcttgccgggttcattgaagctgccgaaaaagccccaccag |
45616 |
T |
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| Q |
121 |
ccaagatgttagcccctacaacaaatccaaccaaaatcgggccaacgccagcatattctcctttctttggattaaccatagttgcatacacagtg |
215 |
Q |
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| T |
45615 |
caaggatgtttgcccccaccacaaacccaactaaggttgggccaaggccagcaagtgctcctttctttgggtcaaccatggttgcatacacagtg |
45521 |
T |
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