View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_low_2 (Length: 700)
Name: NF4007_low_2
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 20 - 685
Target Start/End: Complemental strand, 37084939 - 37084284
Alignment:
| Q |
20 |
cgtttttgtatgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacagttgtcaaccattcacaggcttcaaacaaatcaaatccgaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
37084939 |
cgtttttgtatgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacagttgtcaacaattcacaggcttcaaacaaatcaactccgaa |
37084840 |
T |
|
| Q |
120 |
atgtggcacagttttttgctcatttgcttgccacatccgctctcccttggaacgtgttgtcatatatccggttgactgaagaggacacaacttctgcttc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084839 |
atgtggcacagttttttgctcatttgcttgccacatccgctctcccttggaacgtgttgtcatatatccggttgactgaagaggacacaacttctgcttc |
37084740 |
T |
|
| Q |
220 |
gcggatatttattaagattctgttccaagagttatctgagcatcttggcatacatgtgctgaatgagcggttgaatgatccagcaatgcaggactgtttt |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084739 |
gcggatatttattaagattctgttccaagagttatctgagcatcttggcatacatgtgctgaatgagcggttgaatgatccagcaatgcaggactgtttt |
37084640 |
T |
|
| Q |
320 |
gaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttcttcacgtcgattggacttggcgagcttactaagaatctacgcgtct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084639 |
gaatcaatatttcccaaagatagcacaagaaacacacggttttccattaacttcttcacgtcgattggacttggcgagcttactaagaatctacgcgtct |
37084540 |
T |
|
| Q |
420 |
actataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaaacgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaac |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084539 |
actataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaaacgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaac |
37084440 |
T |
|
| Q |
520 |
cttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttgatggttagaattcaattctgttgatgtagaaggatgttgacnnnn |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084439 |
cttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttgatggttagaattcaattctgttgatgtagaaggatgttgac---- |
37084344 |
T |
|
| Q |
620 |
nnnnnnnnnnnnnnnatagatagtttgttctgcttggattgctttatatatctgatttattttgat |
685 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084343 |
------tttttttttatagatagtttgttctgcttggattgctttatatatctgatttattttgat |
37084284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 614
Target Start/End: Original strand, 37184341 - 37184948
Alignment:
| Q |
20 |
cgtttttgtatgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacagttgtcaaccattcacaggcttcaaacaaatcaaatccgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
37184341 |
cgtttttgtatgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacagttgtcaacaattcacaggcttcaaacaaatcaactccgaa |
37184440 |
T |
|
| Q |
120 |
atgtggcacagttttttgctcatttgcttgccacatccgctctcccttggaacgtgttgtcatatatccggttgactgaagaggacacaacttctgcttc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
37184441 |
atgtggcacagttttttgctcatttgcttgccacatcgactctcccttggaacgtgttatcatatatccggttgactgaagaggacacaacttcttcttc |
37184540 |
T |
|
| Q |
220 |
gcggatatttattaagattctgttccaagagttatctgagcatcttggcatacatgtgctgaatgagcggttgaatgatccagcaatgcaggactgtttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||| |||||| |
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| T |
37184541 |
gcggatatttattaagattctgttccaagagttatctgagcatcttggcatccaggtgctgaatgatcggttgaatgatccagtaatgcaggattgtttt |
37184640 |
T |
|
| Q |
320 |
gaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttcttcacgtcgattggacttggcgagcttactaagaatctacgcgtct |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37184641 |
gaatcattatttcccaaagatagcacaaaaaacacacggttttccattaacttcttcacgtcgattggacttggcgagcttactaagaatctaggcgtct |
37184740 |
T |
|
| Q |
420 |
actataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaaacgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaac |
519 |
Q |
| |
|
| | |||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||| |
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|
| T |
37184741 |
atttgaaaaatctgaccttgcggagctcccattcattggatgaaagtggcagaaaacgtagaagaaaataaagcaaatgcattttaaggcccttgcaaac |
37184840 |
T |
|
| Q |
520 |
cttttgatttc--------------acaatatgtttaagttggttgactttcctttttaattacggttgatggttagaattcaattctgttgatgtagaa |
605 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||| |||||||||||| || || |||||| ||||||||| |||||| ||||||||| |
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|
| T |
37184841 |
cttttgatttagaatcaatggttttacaatatgtt-aagttagtttactttcctttttcataactgttgatagttagaattggattctgctgatgtagag |
37184939 |
T |
|
| Q |
606 |
ggatgttga |
614 |
Q |
| |
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||||||||| |
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|
| T |
37184940 |
ggatgttga |
37184948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 11339527 - 11339642
Alignment:
| Q |
131 |
ttttttgctcatttgcttgccacatccgctctcccttggaacgtgttgtcatatatccggttgactgaagaggacacaacttctgcttcgcggatattta |
230 |
Q |
| |
|
||||||||||||||||||| || | ||||| |||||| |||| || || || || || ||||||| || |||||||||||| ||||||| ||||||| |
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| T |
11339527 |
ttttttgctcatttgcttgggacttttgctctgccttggcacgtcttatcttacattcgcctgactgaggacgacacaacttcttcttcgcgtatattta |
11339626 |
T |
|
| Q |
231 |
ttaagattctgttcca |
246 |
Q |
| |
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|||||||||| ||||| |
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|
| T |
11339627 |
ttaagattctcttcca |
11339642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 14712567 - 14712516
Alignment:
| Q |
20 |
cgtttttgtatgatcaacaaagtttatcaacaaaactttgaaaagtgttttg |
71 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||| |||||||||| |
|
|
| T |
14712567 |
cgtttttgtatgatcaacaaagtgcatcaagaaaattttgagaagtgttttg |
14712516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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