View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_low_4 (Length: 520)
Name: NF4007_low_4
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 111 - 495
Target Start/End: Complemental strand, 6410402 - 6410018
Alignment:
| Q |
111 |
ttgagaaacactaaaccagattattctcctctataccggaataatataatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattca |
210 |
Q |
| |
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|||||||||| ||||||||||||| |||||| | ||||||| | ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6410402 |
ttgagaaacattaaaccagattatgctcctccaaaccggaaaagtatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattca |
6410303 |
T |
|
| Q |
211 |
aatcaataagaccatctccatcaccatcaacccctttcaccattttcttataagcactaaggctacaactctctcctaacctcttaaatatttgagacaa |
310 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6410302 |
aatcaataagaccatctccatcaccatcgacacctttcaccattttcttacaagcactaaggctgcaactctctcctaacctcttaaatatttgagacaa |
6410203 |
T |
|
| Q |
311 |
ttcctcagcactgattttcccatctccatttatatcaaatacttaaaaagcactcttaatctcctcttcttttatcttgttgccttctccattgaacatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
6410202 |
ttcctcagcactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatt |
6410103 |
T |
|
| Q |
411 |
tccataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcagtatccccaatcc |
495 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6410102 |
tccatgaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccccaatcc |
6410018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 153 - 482
Target Start/End: Original strand, 6399396 - 6399725
Alignment:
| Q |
153 |
aatataatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcacca |
252 |
Q |
| |
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||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6399396 |
aatatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcacca |
6399495 |
T |
|
| Q |
253 |
ttttcttataagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactgattttcccatctccatttatatcaaatac |
352 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
6399496 |
ttttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatac |
6399595 |
T |
|
| Q |
353 |
ttaaaaagcactcttaatctcctcttcttttatcttgttgccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
452 |
Q |
| |
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|| ||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399596 |
ttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
6399695 |
T |
|
| Q |
453 |
tccatcacgttaaatgctttcactgcatca |
482 |
Q |
| |
|
||||| | ||||||||||||||||||||| |
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|
| T |
6399696 |
tccattgctttaaatgctttcactgcatca |
6399725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 153 - 482
Target Start/End: Complemental strand, 6413106 - 6412777
Alignment:
| Q |
153 |
aatataatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcacca |
252 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6413106 |
aatatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcacca |
6413007 |
T |
|
| Q |
253 |
ttttcttataagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactgattttcccatctccatttatatcaaatac |
352 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
6413006 |
ttttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatac |
6412907 |
T |
|
| Q |
353 |
ttaaaaagcactcttaatctcctcttcttttatcttgttgccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
452 |
Q |
| |
|
|| ||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6412906 |
ttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
6412807 |
T |
|
| Q |
453 |
tccatcacgttaaatgctttcactgcatca |
482 |
Q |
| |
|
||||| | ||||||||||||||||||||| |
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|
| T |
6412806 |
tccattgctttaaatgctttcactgcatca |
6412777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 6402916 - 6403072
Alignment:
| Q |
158 |
aatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccattttc |
257 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
6402916 |
aatcacttagacacatttcttgccactcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttca-------- |
6403007 |
T |
|
| Q |
258 |
ttataagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactgattttc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
6403008 |
-------aactaaggctacaactctctcctaacctcttaaatatttgagacaattcatcagcactaattttc |
6403072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 390 - 490
Target Start/End: Original strand, 6405252 - 6405352
Alignment:
| Q |
390 |
ttgccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcagtatccc |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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|
| T |
6405252 |
ttgccttctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtccatggccttaaatgctttcactgcatcagtatccc |
6405351 |
T |
|
| Q |
490 |
c |
490 |
Q |
| |
|
| |
|
|
| T |
6405352 |
c |
6405352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 6413191 - 6413154
Alignment:
| Q |
111 |
ttgagaaacactaaaccagattattctcctctataccg |
148 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
6413191 |
ttgagaaacactaaaccatattattttcctctataccg |
6413154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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