View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4007_low_9 (Length: 320)
Name: NF4007_low_9
Description: NF4007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4007_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 7668327 - 7668619
Alignment:
| Q |
13 |
taggaaatacttgcttcatatatggaccttttgttgcaacttgcaactcgatggaagcgaagaaacatgtggaggatgaccatccaagatcgtgaacttg |
112 |
Q |
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| T |
7668327 |
taggaaatacttgcttcatatatggaccttttgttgcaacttgcaactcgatggaagcgaagaaacatgtggaggatgaccatccaagatcgtgaacttg |
7668426 |
T |
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| Q |
113 |
gtgccgagaaaattagacctgttattttgcttaatgatcaactaagcactagaataataatgcattagccttaaaagatgtgaattgatatgggacacta |
212 |
Q |
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| T |
7668427 |
gtgccgagaaaattagacctgttattttgcttaatgatcaactaagcactagaataataatgcattagccttaaaagatgtgaattgatatgggacacta |
7668526 |
T |
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| Q |
213 |
accttaactttccattgtaagtattgttagctctagagaaatcatcagaaaccaatgatattnnnnnnnttgtgcatgttgctcttctaatct |
305 |
Q |
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| T |
7668527 |
accttaactttccaatgtaagtattgttagctctagagaaatcatcagaaaccaatgatattaaaaaatttgtgcatgttgctcttctaatct |
7668619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 7088989 - 7089277
Alignment:
| Q |
15 |
ggaaatacttgcttcatatatggaccttttgttgcaacttgcaactcgatggaagcgaagaaacatgtggaggatgaccatccaagatcgtgaacttggt |
114 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
7088989 |
ggaagtacttgcttcatat--gaaccttttgttgcaacttgcaactcgatggaagcgaagacacatgtggaggatgaccatctaagattgtgaacttggt |
7089086 |
T |
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| Q |
115 |
gccgagaaaattagacctgttattttgcttaatgatcaactaagcactagaataataatgcattagcc-ttaaaagatgtgaattgatatgggacactaa |
213 |
Q |
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| T |
7089087 |
gccgagaaaattagacctgtt-cattgcttaatgatcaagtaaacagtagaataataatgcattaaccatgaaaaaatgtggattgattgaggagactaa |
7089185 |
T |
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| Q |
214 |
ccttaactttccattgtaagtattgttagctctagagaaatcatcagaaaccaatgatattnnnnnnnttgtgcatgttgctcttctaatct |
305 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7089186 |
ccttaactttccaatgtaagtattgttagctctagagaaatcatcagaaaccaatgatattaaaaattctgtgcatgttgctcttctaatct |
7089277 |
T |
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