View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4008_high_10 (Length: 305)

Name: NF4008_high_10
Description: NF4008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4008_high_10
NF4008_high_10
[»] chr2 (1 HSPs)
chr2 (14-305)||(2410788-2411067)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 2411067 - 2410788
Alignment:
Q  14 gaacccttgaataccgtttcttttattctcttactaccagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaac 113  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2411067 gaacccttgaataccgtttcttttattctcttac---cagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaac 2410971  T
Q  114 ttgttgttacaaacaccaaaacaaaaacaacactgtgttactgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgcctataatt 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| || ||        |||||||||||||||||||||||||||||||||||||||    
T  2410970 ttgttgttacaa-caccaaaacaaaaacaacactgtgttactgtaacgctctt--------aacaaaataatgtcagaaaatcgattcttgcctataatt 2410880  T
Q  214 gaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410879 gaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcc 2410788  T

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