View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4008_high_3 (Length: 352)
Name: NF4008_high_3
Description: NF4008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4008_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 11397265 - 11397616
Alignment:
| Q |
12 |
ccacagatcagttaagtgaaggactcgaaaacagaattggcataatggaaacctcattgagcaggtttgcaatgatcatggattctgttcaaagtgacgt |
111 |
Q |
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| T |
11397265 |
ccacagatcagttaagtgaaggactcgaaaacagaattggcataatggaaacctcattgagcaggtttgcaatgatcatggattctgttcaaagtgacgt |
11397364 |
T |
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| Q |
112 |
aatgcaagtaaacaaaggaacaaaggaaatgcacttggagagtaagtgaccaacattctaaaaatagtttatgcaagttgtatctataacaatcaacata |
211 |
Q |
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| T |
11397365 |
aatgcaagtaaacaaaggaacaaaggaaatgcacttggagagtaagtgaccaacattgtgaaaatagtttatgcaagttgtatctataacaatcaacata |
11397464 |
T |
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| Q |
212 |
agtacttaatatt-----------ggatctttggaaaaaatttagttcttgcattaattcttcattgacaatttgaattcatgtcatcaattttctcagt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11397465 |
agtacttaatattaggtagtaacaggatctttggaaaaaatttagttcttgcattaattcttcattgacaatttgaattcatgtcatcaattttctcagt |
11397564 |
T |
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| Q |
301 |
acattttaccaaattttgtatggctgtcacctcctctttgattctctaccta |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11397565 |
acattttaccaaattttgtatggctgtcacctcctctttgattctctaccta |
11397616 |
T |
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