View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4008_high_5 (Length: 349)
Name: NF4008_high_5
Description: NF4008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4008_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 5297796 - 5297502
Alignment:
| Q |
23 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297796 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
5297697 |
T |
|
| Q |
123 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297696 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
5297597 |
T |
|
| Q |
223 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297596 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
5297502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 5297502 - 5297531
Alignment:
| Q |
298 |
atgaagctgatcagcttcatgatgatgatg |
327 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5297502 |
atgaagctgatcagcttcatgatgatgatg |
5297531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 54721643 - 54721349
Alignment:
| Q |
23 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721643 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
54721544 |
T |
|
| Q |
123 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
222 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721543 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
54721444 |
T |
|
| Q |
223 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721443 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
54721349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 54714664 - 54714572
Alignment:
| Q |
58 |
atagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatgga |
150 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54714664 |
atagatagatataaataacacacaaaccatggccgcaatctctgatcatggaaggatttcagcgttagggttaccgcttttagccacaatgga |
54714572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 54721349 - 54721378
Alignment:
| Q |
298 |
atgaagctgatcagcttcatgatgatgatg |
327 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
54721349 |
atgaagctgatcagcttcatgatgatgatg |
54721378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 5398892 - 5398845
Alignment:
| Q |
71 |
aataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
118 |
Q |
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||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
5398892 |
aataacacacaaaccatggccacaatctctcatcatggaaggatttca |
5398845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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