View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4008_high_9 (Length: 325)

Name: NF4008_high_9
Description: NF4008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4008_high_9
NF4008_high_9
[»] chr3 (4 HSPs)
chr3 (9-325)||(28308404-28308720)
chr3 (105-202)||(24572050-24572145)
chr3 (129-195)||(44887939-44888005)
chr3 (99-156)||(24980622-24980679)
[»] chr7 (3 HSPs)
chr7 (9-239)||(27601916-27602147)
chr7 (104-168)||(2820736-2820800)
chr7 (106-198)||(45201639-45201731)
[»] chr5 (5 HSPs)
chr5 (107-242)||(42740991-42741126)
chr5 (68-215)||(21745096-21745244)
chr5 (9-60)||(21744385-21744436)
chr5 (9-60)||(42740145-42740196)
chr5 (145-189)||(35637378-35637422)
[»] chr1 (6 HSPs)
chr1 (103-190)||(6458469-6458556)
chr1 (140-195)||(22191820-22191875)
chr1 (106-195)||(3073768-3073857)
chr1 (106-195)||(21404850-21404939)
chr1 (104-177)||(33014186-33014259)
chr1 (146-186)||(27393685-27393725)
[»] chr4 (1 HSPs)
chr4 (101-190)||(39936878-39936967)
[»] chr2 (3 HSPs)
chr2 (92-196)||(21566583-21566687)
chr2 (146-188)||(39073195-39073237)
chr2 (135-189)||(15127658-15127712)
[»] chr6 (4 HSPs)
chr6 (101-189)||(28576494-28576582)
chr6 (92-167)||(333742-333817)
chr6 (101-173)||(10388996-10389069)
chr6 (149-186)||(20347959-20347996)
[»] chr8 (1 HSPs)
chr8 (146-186)||(3939267-3939307)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 28308404 - 28308720
Alignment:
Q  9 aagcaaaggcaagaaagaaccaaatgttggatagtctcgacaccttcacatccgaacacgcaaagttgtgaatcgtagatataatgtcacgtgccaccaa 108  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  28308404 aagcaagggcaagaaagaaccaaatgctggatagtctcgacacctccacatccggacacgcaaagttgtgacttgtagatataatgtcacgtgccaccaa 28308503  T
Q  109 attatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcatta 208  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28308504 attatcctttgacagcaacctattccgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcatta 28308603  T
Q  209 gagttatacatctcttgagtagacagcaactgatacacaccccggaccatacaaccaccaccagtaggatcaagcatccactgccaatgagtactgaaaa 308  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28308604 gagttatacatctcctgagtagacaacaactgatacacaccccggaccatacaaccaccaccagtaggatcaagcatccactgccaatgagtacagaaaa 28308703  T
Q  309 attatgaagtaaaattc 325  Q
    |||||||||||||||||    
T  28308704 attatgaagtaaaattc 28308720  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 24572145 - 24572050
Alignment:
Q  105 ccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagta 202  Q
    |||||||||| ||||| ||||||||  | |||| |||||| ||| ||| ||||||||||||||| | ||| || |||||||| ||| |||||| ||||    
T  24572145 ccaaattatcttttgatggcaacct--tccgaataagtctccaaacaaaaatagaaaccttcaaagaaacatgtttgtgccacattaaatctgtagta 24572050  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 44887939 - 44888005
Alignment:
Q  129 tatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 195  Q
    ||||||| || ||||| || ||||||||||| |||||||| |||||||| || ||||||||| ||||    
T  44887939 tatttcgtaggagtctccatgcaagaatagacaccttcaaaggaacctgtttatgccaaattaaatc 44888005  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 24980679 - 24980622
Alignment:
Q  99 gtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaat 156  Q
    ||||||||||||| ||||| | ||| ||||| || |||||||||| ||||||||||||    
T  24980679 gtgccaccaaattgtccttagtcggtaaccttttacgaagaagtcatcaagcaagaat 24980622  T

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Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 27602147 - 27601916
Alignment:
Q  9 aagcaaaggcaagaaagaaccaaatgttggatagtctcgacaccttcacatccgaacacgcaaagttgtgaatcgt-agatataatgtcacgtgccacca 107  Q
    |||||| ||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||| | ||| | || | |||||||||| || ||||| |    
T  27602147 aagcaagggcaagaaagaaccaaatgttagacagtcttgacacctccacatccggacacgcaaagctatgacttgtgaaatataatgtcgcgcgccacta 27602048  T
Q  108 aattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcatt 207  Q
    |||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  27602047 aattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcatt 27601948  T
Q  208 agagttatacatctcttgagtagacagcaact 239  Q
    |||||||| || ||| | |||||||| |||||    
T  27601947 agagttatgcacctcctaagtagacaacaact 27601916  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 2820800 - 2820736
Alignment:
Q  104 accaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaa 168  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  2820800 accaaattatcctttgatggcaaccaatttcgaagaagtcttcaaacaaaaatagaaaccttcaa 2820736  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 45201639 - 45201731
Alignment:
Q  106 caaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctga 198  Q
    |||||||||||| | | |||| |||||  |||| ||||| || |||||||||||||||||||||  || ||| |||||| ||||| |||||||    
T  45201639 caaattatccttcgtcagcaatctattctgaaggagtctccatgcaagaatagaaaccttcaagaaaatctgtttgtgcaaaattaaatctga 45201731  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 242
Target Start/End: Original strand, 42740991 - 42741126
Alignment:
Q  107 aaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcat 206  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||  |  ||| || |||||||||||| |||||||| ||||||    
T  42740991 aaattatcctttgacagcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaaatagcat 42741090  T
Q  207 tagagttatacatctcttgagtagacagcaactgat 242  Q
    || |||||| |  |||||| ||| ||| ||||||||    
T  42741091 taaagttatgctcctcttgggtaaacatcaactgat 42741126  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 21745096 - 21745244
Alignment:
Q  68 gcaaagttgtgaatcgt-agatataatgtcacgtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttc 166  Q
    |||||||||||| || | |||||||||| | |  |||| ||||||||||||||||  |||||||||| |||||||||| ||| | || |||||||| |||    
T  21745096 gcaaagttgtgactcatgagatataatgccgcacgccatcaaattatcctttgacaacaacctattttgaagaagtctccaaactagcatagaaactttc 21745195  T
Q  167 aagggaacctgcttgtgccaaattcaatctgaagtagcattagagttat 215  Q
      |  ||| || |||||||||||| ||||||||||||||||| ||||||    
T  21745196 ttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttat 21745244  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 21744385 - 21744436
Alignment:
Q  9 aagcaaaggcaagaaagaaccaaatgttggatagtctcgacaccttcacatc 60  Q
    |||||| || |||||||||||||||||||||||| |||||||||| ||||||    
T  21744385 aagcaagggtaagaaagaaccaaatgttggatagactcgacacctccacatc 21744436  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 42740145 - 42740196
Alignment:
Q  9 aagcaaaggcaagaaagaaccaaatgttggatagtctcgacaccttcacatc 60  Q
    |||||| |||||||||||| ||||||||||||||  ||||||||| ||||||    
T  42740145 aagcaagggcaagaaagaatcaaatgttggatagattcgacacctccacatc 42740196  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 35637378 - 35637422
Alignment:
Q  145 tcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaat 189  Q
    ||||||||||||||| ||||||||||| ||| |||| ||||||||    
T  35637378 tcaagcaagaatagagaccttcaagggtaccagcttatgccaaat 35637422  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 6458556 - 6458469
Alignment:
Q  103 caccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaatt 190  Q
    |||||||||||||||    ||||||||| | ||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||    
T  6458556 caccaaattatccttcattggcaacctactccgaagaagtcttcaagcaaaaatagaaactgtcaagggaacctgtttgtgccaaatt 6458469  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 22191875 - 22191820
Alignment:
Q  140 agtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 195  Q
    ||||| ||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  22191875 agtctccaagcaagaatagaaaccttcaaaggaacctgtttatgccaaattaaatc 22191820  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 3073768 - 3073857
Alignment:
Q  106 caaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 195  Q
    |||||||||||| | ||| |  |||||| | || ||||| || |||| |||||| ||||||||||||||||| |||||||||||| ||||    
T  3073768 caaattatccttcgtcggtagtctattttgtaggagtctccacgcaaaaatagagaccttcaagggaacctgtttgtgccaaattaaatc 3073857  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 21404850 - 21404939
Alignment:
Q  106 caaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 195  Q
    |||||||||||| | ||| || ||||| || || ||||| || ||||||||||| ||||||| ||||||||| || ||||||||| ||||    
T  21404850 caaattatccttcgtcggtaatctattccgtaggagtctccatgcaagaatagagaccttcaggggaacctgtttatgccaaattaaatc 21404939  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 33014186 - 33014259
Alignment:
Q  104 accaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctg 177  Q
    |||||||||||||||| | ||||||| || ||||| || |  ||||||  ||||||||||||||| ||||||||    
T  33014186 accaaattatcctttgtctgcaacctgttgcgaaggagacaccaagcacaaatagaaaccttcaaaggaacctg 33014259  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 27393725 - 27393685
Alignment:
Q  146 caagcaagaatagaaaccttcaagggaacctgcttgtgcca 186  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
T  27393725 caagcaagaatagagaccttcaagggtacctgcttatgcca 27393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 39936967 - 39936878
Alignment:
Q  101 gccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaatt 190  Q
    |||||||| || ||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||  || |||||||||    
T  39936967 gccaccaagttgtcctttgtcggcaacctattccgaagaagtctccaagcaaaaatagaaaccttcaggggtacctatttatgccaaatt 39936878  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 21566687 - 21566583
Alignment:
Q  92 atgtcacgtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattc 191  Q
    ||||| || |||||||| ||| |||| | | |||||||||| ||||||| ||||||||||  |||| ||||||||||||||||||| ||  ||||||||     
T  21566687 atgtcgcgcgccaccaagttaaccttcgtcagcaacctattccgaagaactcttcaagcagaaataaaaaccttcaagggaacctgtttaagccaaatta 21566588  T
Q  192 aatct 196  Q
    |||||    
T  21566587 aatct 21566583  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 39073195 - 39073237
Alignment:
Q  146 caagcaagaatagaaaccttcaagggaacctgcttgtgccaaa 188  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  39073195 caagcaagaatagacaccttcaagggaacctgcttgtgccaaa 39073237  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 15127712 - 15127658
Alignment:
Q  135 gaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaat 189  Q
    ||||||||| |||||||| ||||||||||||||| ||||| | ||| ||||||||    
T  15127712 gaagaagtcatcaagcaaaaatagaaaccttcaaaggaacatccttatgccaaat 15127658  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 28576582 - 28576494
Alignment:
Q  101 gccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaat 189  Q
    |||||||| || ||||||| ||||| |||||| |||| |||||| ||| ||| |||||||||||||| ||| ||||| || ||||||||    
T  28576582 gccaccaagttgtcctttgtcggcagcctattccgaaaaagtctccaaacaaaaatagaaaccttcaggggtacctgtttatgccaaat 28576494  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 333817 - 333742
Alignment:
Q  92 atgtcacgtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttca 167  Q
    ||||| || |||||||| || ||||||| ||| |||||||| ||||||||||| ||| ||| ||||||||||||||    
T  333817 atgtcgcgcgccaccaagttgtcctttgtcggaaacctattccgaagaagtctccaaacaaaaatagaaaccttca 333742  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 10389069 - 10388996
Alignment:
Q  101 gccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaaga-atagaaaccttcaagggaa 173  Q
    |||||||||||| |||||||||| | |||||| ||||||||||| |||| || | |  ||||||||||||||||    
T  10389069 gccaccaaattaccctttgacggtagcctattccgaagaagtctccaagtaaaacagtgaaaccttcaagggaa 10388996  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 20347959 - 20347996
Alignment:
Q  149 gcaagaatagaaaccttcaagggaacctgcttgtgcca 186  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  20347959 gcaagaatagagaccttcaagggtacctgcttgtgcca 20347996  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 3939267 - 3939307
Alignment:
Q  146 caagcaagaatagaaaccttcaagggaacctgcttgtgcca 186  Q
    ||||||||||| ||||||||||| ||||||||||| |||||    
T  3939267 caagcaagaatggaaaccttcaaaggaacctgcttatgcca 3939307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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