View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4009_high_4 (Length: 430)
Name: NF4009_high_4
Description: NF4009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4009_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 10969196 - 10969599
Alignment:
| Q |
11 |
atgaagtgcaaccttgatctcattcatgttatttatagtttatcgaaagacttagggtttcctggttttagggttgggatagtttattcatacaatgatc |
110 |
Q |
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| T |
10969196 |
atgaagtgcaaccttgatctcattcatgttatttatagtttatcgaaagacttagggtttcctggttttagggttgggatagtttattcatacaatgatc |
10969295 |
T |
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| Q |
111 |
aagtggtgaattgtggaaggaaaatgtcaagctttggattagtctcatctcaaactcaatacatgcttgcttcaatgctttctgatgaaaaatttgttga |
210 |
Q |
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| T |
10969296 |
aagtggtgaattgtggaaggaaaatgtcaagctttggattagtctcatctcaaactcaatacatgcttgcttcaatgctttctgatgaaaaatttgttga |
10969395 |
T |
|
| Q |
211 |
caagtttcttttagagagttcgagaaggttgttaaaaaggcatgacaaatttacaaagggactcgaagaggttgaaattagtcgatttccaagtaatgcg |
310 |
Q |
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| T |
10969396 |
caagtttcttttagagagttcgagaaggttgttaaaaaggcatgacaaatttacaaagggactcgaagaggttgaaattagtcgatttccaagtaatgcg |
10969495 |
T |
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| Q |
311 |
ggacttttttgttggatgaacttgaaaaaattgcttaaggaggaaacaattgaagaagagttgaagctttggcatgttattattaatgaggtgaagctta |
410 |
Q |
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| T |
10969496 |
ggacttttttgttggatgaacttgaaaaaattgcttaaggaggaaacaattgaagaagagttgaagctttggcatgttattattaatgaggtgaagctta |
10969595 |
T |
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| Q |
411 |
atgt |
414 |
Q |
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| T |
10969596 |
atgt |
10969599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 50 - 297
Target Start/End: Complemental strand, 7754706 - 7754464
Alignment:
| Q |
50 |
ttatcgaaagacttagggtttcctggttttagggttgggatagtttattcatacaatgatcaagtggtgaattgtggaaggaaaatgtcaagctttggat |
149 |
Q |
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| T |
7754706 |
ttatcaaaggacttagggttccctaattttagggttggaatagtttattcataaaaagatcatgcagtgaattgtgtaaggaaaatgtcaagttttggat |
7754607 |
T |
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| Q |
150 |
tagtctcatctcaaactcaatacatgcttgc---ttcaatgctttctgatgaaaaatttgttgacaagtttcttttagagagttcgagaaggttgttaaa |
246 |
Q |
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| T |
7754606 |
tagtc-------aaactcaacatatgtctgcgccttcaatgctttgtaatgaaaaatttgttgacacatttagtttagagagctcaagaacgttgttaaa |
7754514 |
T |
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| Q |
247 |
aaggcatgacaaatttacaaagggactcgaagaggttgaaattagtcgatt |
297 |
Q |
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| T |
7754513 |
aaggcatgaaaaatttacaga-ggacttgaagaggttgaaattagttgatt |
7754464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 29963998 - 29963865
Alignment:
| Q |
26 |
gatctcattcatgttatttatagtttatcgaaagacttagggtttcctggttttagggttgggatagtttattcatacaatgatcaagtggtgaattgtg |
125 |
Q |
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||||||||||| |||| ||||||||||| |||||| | || |||| |||||||| ||||| | |||||||| ||||| ||| |||| ||||| || | |
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| T |
29963998 |
gatctcattcacattatctatagtttatcaaaagacatgggtcttccgggttttagagttggtttggtttattcgtacaacgatgaagttgtgaactgcg |
29963899 |
T |
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| Q |
126 |
gaaggaaaatgtcaagctttggattagtctcatc |
159 |
Q |
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| T |
29963898 |
gtagaaaaatgtcgagctttggattagtctcatc |
29963865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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