View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4009_high_5 (Length: 428)
Name: NF4009_high_5
Description: NF4009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4009_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 38713607 - 38713200
Alignment:
| Q |
7 |
taagaaaaatgaaaaacaatcatcctaacctaacctaacctaaccaaaccattcagttgacataaacagaaaactttagttcataaataaccagttctgt |
106 |
Q |
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| T |
38713607 |
taagaaaaatgaaaaacaatcctcctaacctaacctaacctaaccaaaccattcagttgacataaacagaaaactttagttcataaataaccagttttgt |
38713508 |
T |
|
| Q |
107 |
tcctcacaaaccaaaccatagaactagacatacacagtgatagaaacagagaaactttggaaaagaaaagacataacaa-gtggtgttgtagggtgagac |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
38713507 |
tcctcacaaaccaaaccatagaactagacatacacagtgatagaaacagagaaactttggaaaagaaaagacataacaaagtggtgttgtagagtgagac |
38713408 |
T |
|
| Q |
206 |
atgagaggaagtggaagtgacccatcatcagaagcaaagggagacatgaaagtgaatcagaaacctgcatggttagagaggttaatgggtgagacattct |
305 |
Q |
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| T |
38713407 |
atgagaggaagtggaagtgacccatcatcagaagcaaagggagacatgaaagtgaatcagaaacctgcatggttagagaggttaatgggtgagacattct |
38713308 |
T |
|
| Q |
306 |
ttgggggttgtggggtccaccagaaccaaaggaagaacgaaaagaacatcctttgtttgcactgttgtctcaccatttgccctcactgtctcccttctca |
405 |
Q |
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| T |
38713307 |
ttgggggttgtggggtccaccagaaccaaaggaagaacgaaaagaacatcctttgtttgcactgttgtctcaccatttgccctcactgtctcccttctca |
38713208 |
T |
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| Q |
406 |
tccctctc |
413 |
Q |
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| T |
38713207 |
tccctctc |
38713200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 393
Target Start/End: Original strand, 15350875 - 15351003
Alignment:
| Q |
265 |
gaaacctgcatggttagagaggttaatgggtgagacattctttgggggttgtggggtccaccagaaccaaaggaagaacgaaaagaacatcctttgtttg |
364 |
Q |
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||||||||||||| |||||||||| |||| ||| ||||||||||| | ||||||||||||| |||| | |||||||||||| |||||||| |||| || |
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| T |
15350875 |
gaaacctgcatggctagagaggttgatggatgaaacattctttggtgattgtggggtccacaagaatcgaaggaagaacgagaagaacattttttgctta |
15350974 |
T |
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| Q |
365 |
cactgttgtctcaccatttgccctcactg |
393 |
Q |
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| T |
15350975 |
cactgttgtcttagcatctgcccccactg |
15351003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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