View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4009_high_6 (Length: 320)

Name: NF4009_high_6
Description: NF4009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4009_high_6
NF4009_high_6
[»] chr3 (4 HSPs)
chr3 (1-302)||(28308420-28308721)
chr3 (81-178)||(24572050-24572145)
chr3 (105-171)||(44887939-44888005)
chr3 (75-132)||(24980622-24980679)
[»] chr7 (3 HSPs)
chr7 (1-215)||(27601916-27602131)
chr7 (80-144)||(2820736-2820800)
chr7 (82-174)||(45201639-45201731)
[»] chr5 (3 HSPs)
chr5 (83-218)||(42740991-42741126)
chr5 (44-191)||(21745096-21745244)
chr5 (121-165)||(35637378-35637422)
[»] chr1 (6 HSPs)
chr1 (79-166)||(6458469-6458556)
chr1 (116-171)||(22191820-22191875)
chr1 (82-171)||(3073768-3073857)
chr1 (82-171)||(21404850-21404939)
chr1 (80-153)||(33014186-33014259)
chr1 (122-162)||(27393685-27393725)
[»] chr4 (1 HSPs)
chr4 (77-166)||(39936878-39936967)
[»] chr2 (3 HSPs)
chr2 (68-172)||(21566583-21566687)
chr2 (122-164)||(39073195-39073237)
chr2 (111-165)||(15127658-15127712)
[»] chr6 (4 HSPs)
chr6 (77-165)||(28576494-28576582)
chr6 (68-143)||(333742-333817)
chr6 (77-149)||(10388996-10389069)
chr6 (125-162)||(20347959-20347996)
[»] chr8 (1 HSPs)
chr8 (122-162)||(3939267-3939307)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 28308420 - 28308721
Alignment:
Q  1 gaaccaaatgttggatagtctcgacaccttcacatccgaacacgcaaagttgtgaatcgtagatataatgtcacgtgccaccaaattatcctttgacggc 100  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||    
T  28308420 gaaccaaatgctggatagtctcgacacctccacatccggacacgcaaagttgtgacttgtagatataatgtcacgtgccaccaaattatcctttgacagc 28308519  T
Q  101 aacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcattagagttatacatctctt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28308520 aacctattccgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcattagagttatacatctcct 28308619  T
Q  201 gagtagacagcaactgatacacaccccggaccatacaaccaccaccagtaggatcaagcatccactgccaatgagtactgaaaaattatgaagtaaaatt 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28308620 gagtagacaacaactgatacacaccccggaccatacaaccaccaccagtaggatcaagcatccactgccaatgagtacagaaaaattatgaagtaaaatt 28308719  T
Q  301 ct 302  Q
    ||    
T  28308720 ct 28308721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 24572145 - 24572050
Alignment:
Q  81 ccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagta 178  Q
    |||||||||| ||||| ||||||||  | |||| |||||| ||| ||| ||||||||||||||| | ||| || |||||||| ||| |||||| ||||    
T  24572145 ccaaattatcttttgatggcaacct--tccgaataagtctccaaacaaaaatagaaaccttcaaagaaacatgtttgtgccacattaaatctgtagta 24572050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 44887939 - 44888005
Alignment:
Q  105 tatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 171  Q
    ||||||| || ||||| || ||||||||||| |||||||| |||||||| || ||||||||| ||||    
T  44887939 tatttcgtaggagtctccatgcaagaatagacaccttcaaaggaacctgtttatgccaaattaaatc 44888005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 24980679 - 24980622
Alignment:
Q  75 gtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaat 132  Q
    ||||||||||||| ||||| | ||| ||||| || |||||||||| ||||||||||||    
T  24980679 gtgccaccaaattgtccttagtcggtaaccttttacgaagaagtcatcaagcaagaat 24980622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 27602131 - 27601916
Alignment:
Q  1 gaaccaaatgttggatagtctcgacaccttcacatccgaacacgcaaagttgtgaatcgt-agatataatgtcacgtgccaccaaattatcctttgacgg 99  Q
    |||||||||||| || ||||| ||||||| |||||||| |||||||||| | ||| | || | |||||||||| || ||||| ||||||||| ||||||     
T  27602131 gaaccaaatgttagacagtcttgacacctccacatccggacacgcaaagctatgacttgtgaaatataatgtcgcgcgccactaaattatcccttgacga 27602032  T
Q  100 caacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcattagagttatacatctct 199  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| || |||     
T  27602031 caacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcattagagttatgcacctcc 27601932  T
Q  200 tgagtagacagcaact 215  Q
    | |||||||| |||||    
T  27601931 taagtagacaacaact 27601916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 2820800 - 2820736
Alignment:
Q  80 accaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaa 144  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  2820800 accaaattatcctttgatggcaaccaatttcgaagaagtcttcaaacaaaaatagaaaccttcaa 2820736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 45201639 - 45201731
Alignment:
Q  82 caaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctga 174  Q
    |||||||||||| | | |||| |||||  |||| ||||| || |||||||||||||||||||||  || ||| |||||| ||||| |||||||    
T  45201639 caaattatccttcgtcagcaatctattctgaaggagtctccatgcaagaatagaaaccttcaagaaaatctgtttgtgcaaaattaaatctga 45201731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 42740991 - 42741126
Alignment:
Q  83 aaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcat 182  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||  |  ||| || |||||||||||| |||||||| ||||||    
T  42740991 aaattatcctttgacagcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaaatagcat 42741090  T
Q  183 tagagttatacatctcttgagtagacagcaactgat 218  Q
    || |||||| |  |||||| ||| ||| ||||||||    
T  42741091 taaagttatgctcctcttgggtaaacatcaactgat 42741126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 21745096 - 21745244
Alignment:
Q  44 gcaaagttgtgaatcgt-agatataatgtcacgtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttc 142  Q
    |||||||||||| || | |||||||||| | |  |||| ||||||||||||||||  |||||||||| |||||||||| ||| | || |||||||| |||    
T  21745096 gcaaagttgtgactcatgagatataatgccgcacgccatcaaattatcctttgacaacaacctattttgaagaagtctccaaactagcatagaaactttc 21745195  T
Q  143 aagggaacctgcttgtgccaaattcaatctgaagtagcattagagttat 191  Q
      |  ||| || |||||||||||| ||||||||||||||||| ||||||    
T  21745196 ttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttat 21745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 35637378 - 35637422
Alignment:
Q  121 tcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaat 165  Q
    ||||||||||||||| ||||||||||| ||| |||| ||||||||    
T  35637378 tcaagcaagaatagagaccttcaagggtaccagcttatgccaaat 35637422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 6458556 - 6458469
Alignment:
Q  79 caccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaatt 166  Q
    |||||||||||||||    ||||||||| | ||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||    
T  6458556 caccaaattatccttcattggcaacctactccgaagaagtcttcaagcaaaaatagaaactgtcaagggaacctgtttgtgccaaatt 6458469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 22191875 - 22191820
Alignment:
Q  116 agtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 171  Q
    ||||| ||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  22191875 agtctccaagcaagaatagaaaccttcaaaggaacctgtttatgccaaattaaatc 22191820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 3073768 - 3073857
Alignment:
Q  82 caaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 171  Q
    |||||||||||| | ||| |  |||||| | || ||||| || |||| |||||| ||||||||||||||||| |||||||||||| ||||    
T  3073768 caaattatccttcgtcggtagtctattttgtaggagtctccacgcaaaaatagagaccttcaagggaacctgtttgtgccaaattaaatc 3073857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 21404850 - 21404939
Alignment:
Q  82 caaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatc 171  Q
    |||||||||||| | ||| || ||||| || || ||||| || ||||||||||| ||||||| ||||||||| || ||||||||| ||||    
T  21404850 caaattatccttcgtcggtaatctattccgtaggagtctccatgcaagaatagagaccttcaggggaacctgtttatgccaaattaaatc 21404939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 33014186 - 33014259
Alignment:
Q  80 accaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctg 153  Q
    |||||||||||||||| | ||||||| || ||||| || |  ||||||  ||||||||||||||| ||||||||    
T  33014186 accaaattatcctttgtctgcaacctgttgcgaaggagacaccaagcacaaatagaaaccttcaaaggaacctg 33014259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 27393725 - 27393685
Alignment:
Q  122 caagcaagaatagaaaccttcaagggaacctgcttgtgcca 162  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
T  27393725 caagcaagaatagagaccttcaagggtacctgcttatgcca 27393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 39936967 - 39936878
Alignment:
Q  77 gccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaatt 166  Q
    |||||||| || ||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||  || |||||||||    
T  39936967 gccaccaagttgtcctttgtcggcaacctattccgaagaagtctccaagcaaaaatagaaaccttcaggggtacctatttatgccaaatt 39936878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 21566687 - 21566583
Alignment:
Q  68 atgtcacgtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattc 167  Q
    ||||| || |||||||| ||| |||| | | |||||||||| ||||||| ||||||||||  |||| ||||||||||||||||||| ||  ||||||||     
T  21566687 atgtcgcgcgccaccaagttaaccttcgtcagcaacctattccgaagaactcttcaagcagaaataaaaaccttcaagggaacctgtttaagccaaatta 21566588  T
Q  168 aatct 172  Q
    |||||    
T  21566587 aatct 21566583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 39073195 - 39073237
Alignment:
Q  122 caagcaagaatagaaaccttcaagggaacctgcttgtgccaaa 164  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  39073195 caagcaagaatagacaccttcaagggaacctgcttgtgccaaa 39073237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 15127712 - 15127658
Alignment:
Q  111 gaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaat 165  Q
    ||||||||| |||||||| ||||||||||||||| ||||| | ||| ||||||||    
T  15127712 gaagaagtcatcaagcaaaaatagaaaccttcaaaggaacatccttatgccaaat 15127658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 28576582 - 28576494
Alignment:
Q  77 gccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaat 165  Q
    |||||||| || ||||||| ||||| |||||| |||| |||||| ||| ||| |||||||||||||| ||| ||||| || ||||||||    
T  28576582 gccaccaagttgtcctttgtcggcagcctattccgaaaaagtctccaaacaaaaatagaaaccttcaggggtacctgtttatgccaaat 28576494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 333817 - 333742
Alignment:
Q  68 atgtcacgtgccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaagaatagaaaccttca 143  Q
    ||||| || |||||||| || ||||||| ||| |||||||| ||||||||||| ||| ||| ||||||||||||||    
T  333817 atgtcgcgcgccaccaagttgtcctttgtcggaaacctattccgaagaagtctccaaacaaaaatagaaaccttca 333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 10389069 - 10388996
Alignment:
Q  77 gccaccaaattatcctttgacggcaacctatttcgaagaagtcttcaagcaaga-atagaaaccttcaagggaa 149  Q
    |||||||||||| |||||||||| | |||||| ||||||||||| |||| || | |  ||||||||||||||||    
T  10389069 gccaccaaattaccctttgacggtagcctattccgaagaagtctccaagtaaaacagtgaaaccttcaagggaa 10388996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 20347959 - 20347996
Alignment:
Q  125 gcaagaatagaaaccttcaagggaacctgcttgtgcca 162  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  20347959 gcaagaatagagaccttcaagggtacctgcttgtgcca 20347996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 3939267 - 3939307
Alignment:
Q  122 caagcaagaatagaaaccttcaagggaacctgcttgtgcca 162  Q
    ||||||||||| ||||||||||| ||||||||||| |||||    
T  3939267 caagcaagaatggaaaccttcaaaggaacctgcttatgcca 3939307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University