View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4009_low_1 (Length: 967)
Name: NF4009_low_1
Description: NF4009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4009_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 30369744 - 30369194
Alignment:
| Q |
1 |
atattgataaatgattaatgaatctcatttaagacgtttattgaggtgctggtcggagggataaatgtttgtgagatattactaataaataggaaatact |
100 |
Q |
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| T |
30369744 |
atattgataaatgattaatgaatctcatttaagaggtttattgaggtgctggtcggagggataagcgtctgtgagatattactaataaatagaaaatgct |
30369645 |
T |
|
| Q |
101 |
aacgagttgcattataaactatgaaaatatttgatttaatcatgctgttgaatcaaatcaatgatccaattgtttgatctgtaaattaaagatccaacaa |
200 |
Q |
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| T |
30369644 |
aacgagttgcattataaactatgaaaatatttgatttaatcatgttgttcaattaa-----tgatccaattgtttgatatgtaaatcaaagatccaacaa |
30369550 |
T |
|
| Q |
201 |
gaccaaaccaattttt-aaaacattgattattatgaataaaataccatgagtttgctttcaagaaagaaa-taataaaaaacaatgcgttatagactatg |
298 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
30369549 |
gaccaaaccaattttttaaaaaattgattattatgaataaaataccatgagtttgcttgcaagaaaaaaaataataaaaaacaatgcgttatagactatg |
30369450 |
T |
|
| Q |
299 |
aaaatgacactaatttgcttttaagatatttaagatatattgatgaaaaatcc-aacaaacggagaatttcataaactataataagtggttcatgcaatt |
397 |
Q |
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| T |
30369449 |
aaaatgacactaatttgcttttaagatat---------attgatgaaaaatcccaacaaaaggagaatttcataaactaca----gtggttcatgcaatt |
30369363 |
T |
|
| Q |
398 |
tccattatc-------tatcttgaaggcatcttgacgattataaactctaccgtactagatttttgtgacaatgtgggactatttgtaggtcccctttct |
490 |
Q |
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| T |
30369362 |
tccattgtcatgaatgtatcttgaaggcatcttgacgattataaactcaaccgtactagatttttgtgacaatgtgggactatttgtaggacccctttct |
30369263 |
T |
|
| Q |
491 |
tgcttttctaagcttcagaagtagatgcataaaaaatgattcttcaagtttatgccaattttatagaac |
559 |
Q |
| |
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| T |
30369262 |
tgcttttctaagcttcagaagtagatgcataaaaaatgattcttcaagtttatgccaatttcatagaac |
30369194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 599 - 676
Target Start/End: Complemental strand, 30369200 - 30369123
Alignment:
| Q |
599 |
ataggacaaggtttgaatgtttaaattcaattggtcctccctgaaagtttttgtcttaactccttagattggtttaga |
676 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30369200 |
atagaacaaggtttgaatgtttaaattcaattggtcctctctgaaagtttttgtcttaactccttagattggtttaga |
30369123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 30365720 - 30365672
Alignment:
| Q |
209 |
caatttttaaaacattgattattatgaataaaataccatgagtttgctt |
257 |
Q |
| |
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| T |
30365720 |
caatttttaaaacattgattattaggaatgaaacaccatgagtttgctt |
30365672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 571 - 664
Target Start/End: Complemental strand, 31386096 - 31386007
Alignment:
| Q |
571 |
aagtattttaaactgaataatcaatcatataggacaaggtttgaatgtttaaattcaattggtcctccctgaaagtttttgtcttaactcctta |
664 |
Q |
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| T |
31386096 |
aagtatcttaaactgaataatca----tataggacaagatttgaatgtttgaattcaattggttatccctgaaagtttatctcttaacttctta |
31386007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 674
Target Start/End: Complemental strand, 20997979 - 20997899
Alignment:
| Q |
594 |
atcatataggacaaggtttgaatgtttaaattcaattggtcctccctgaaagtttttgtcttaactccttagattggttta |
674 |
Q |
| |
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| T |
20997979 |
atcatataggacaaggtttgaatggtagaattcaattggtcatccctaaaagttcatctcttaacaccttacattagttta |
20997899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 30607495 - 30607454
Alignment:
| Q |
213 |
ttttaaaacattgattattatgaataaaataccatgagtttg |
254 |
Q |
| |
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| T |
30607495 |
ttttaaaacattgattattataaattaaataccatgagtttg |
30607454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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