View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4009_low_10 (Length: 228)

Name: NF4009_low_10
Description: NF4009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4009_low_10
NF4009_low_10
[»] chr7 (12 HSPs)
chr7 (15-209)||(33305300-33305494)
chr7 (15-209)||(31540902-31541099)
chr7 (36-203)||(31573006-31573176)
chr7 (24-209)||(31532276-31532467)
chr7 (24-209)||(31618150-31618338)
chr7 (24-209)||(31604546-31604734)
chr7 (24-154)||(31575938-31576068)
chr7 (24-144)||(31595005-31595125)
chr7 (24-144)||(31614489-31614609)
chr7 (24-144)||(31608208-31608328)
chr7 (24-144)||(31585358-31585478)
chr7 (105-153)||(31439258-31439306)
[»] chr1 (1 HSPs)
chr1 (28-209)||(52174475-52174659)
[»] chr4 (1 HSPs)
chr4 (24-194)||(15063524-15063697)
[»] scaffold0394 (1 HSPs)
scaffold0394 (24-144)||(1890-2010)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 33305300 - 33305494
Alignment:
Q  15 cataggtccgatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtact 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305300 cataagtccgatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtact 33305399  T
Q  115 tttcagattggatttataaggatcttgagctaagtaataaccttaattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattact 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305400 tttcagattggatttataaggatcttgagctaagtaataaccttaattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattact 33305494  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 31541099 - 31540902
Alignment:
Q  15 cataggtccgatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtact 114  Q
    |||| ||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||||||  |    
T  31541099 cataagtctgatgtatatagttatggtatgttaattctagaaatggttgggggaagaaagaattatgacactggagggtcatgtacttctgaaatgtgtt 31541000  T
Q  115 tttcagattggatttataaggatcttgagctaagtaataacct---taattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattact 209  Q
    || ||||||||||||||||||||||||||| |  |||||||||   ||||||||  ||||||||| | |||||||||||||||| ||||| |||||||    
T  31540999 ttccagattggatttataaggatcttgagcaagctaataaccttgctaattgtttagcaaactcaaaggaagaaaatgatatggtaagaatgattact 31540902  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 31573006 - 31573176
Alignment:
Q  36 tatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataagg 135  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||||| ||||| || |||||||||||| |||||||||||||||| |    
T  31573006 tatggtatgttaattttagaaatgattggtggaagaaagaactatgacacaggagggtcgtgtacttctgaaatgtactttccagattggatttataatg 31573105  T
Q  136 atcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaag 203  Q
    |||||||||||||||||||| ||   ||| |||  |||||||| || ||||||| |||||||| |||||||    
T  31573106 atcttgagctaagtaataactttgtgaatggtttagcaaactccgaggaagaaactgatatggtaagaaag 31573176  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 31532467 - 31532276
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    ||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||| | || |    
T  31532467 gatgtatacagttatgggatgttaattctagaaatgattggaggaagaaagaattatgacactggagggtcatgtacttctgaaatgtactttcctgact 31532368  T
Q  124 ggatttataaggatcttgagcta---agtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattact 209  Q
    ||||||||||||||||||| | |   | ||||||||||   |||| ||  | ||| ||||| ||||||||||||||||  ||||||||||||    
T  31532367 ggatttataaggatcttgaacaaggtaataataaccttgtgaattatttagaaaattcagaggaagaaaatgatatggtgagaaagattact 31532276  T

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Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 31618338 - 31618150
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    |||||||| |||||||| ||||| || || ||||||||||| ||||| ||||| || |||||||||||||||||||| || |||||||||||| ||||||    
T  31618338 gatgtatatagttatggcatgttgattcttgaaatgatcggaggaaggaagaactacgacacgggagggtcatgtacttctgaaatgtactttccagatt 31618239  T
Q  124 ggatttataaggatcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattact 209  Q
    ||||||||||||||||||||| | | ||||  |||   ||||||||  ||| ||| || |||||||||||||||   ||||||||||||    
T  31618238 ggatttataaggatcttgagcaagggaatactcttttaaattgttcaacaatctcggaggaagaaaatgatatgatcagaaagattact 31618150  T

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Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 31604734 - 31604546
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    |||||||| |||||||| ||||| || || ||||||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||||||| ||||||    
T  31604734 gatgtatatagttatggcatgttgattcttgaaatgatcggaggaaggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagatt 31604635  T
Q  124 ggatttataaggatcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattact 209  Q
    ||||||||||||||||||||| | ||||||  |||   ||||||||  ||  ||| || ||||||||||||||||  ||||||||||||    
T  31604634 ggatttataaggatcttgagcaaggtaatactcttttaaattgttcgacagtctcggaggaagaaaatgatatggtcagaaagattact 31604546  T

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Target: chr7; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 31576068 - 31575938
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    |||||||| |||||||| ||||| || || ||||||||||| ||||| ||||| |||||||| |||||||| |||||  |||||||||| ||| ||||||    
T  31576068 gatgtatatagttatggcatgttgattcttgaaatgatcggaggaaggaagaactatgacactggagggtcgtgtactccggaaatgtattttccagatt 31575969  T
Q  124 ggatttataaggatcttgagctaagtaataa 154  Q
    ||||||||||||||||||||| | |||||||    
T  31575968 ggatttataaggatcttgagcaaggtaataa 31575938  T

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Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 31595125 - 31595005
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    ||||||||||||||||||||||| || || |||||||| || ||||||||||| ||| | || |||||||| ||||| || |||||||||||| |||| |    
T  31595125 gatgtatacagttatggtatgttgattcttgaaatgattggaggaagaaagaactatcaaactggagggtcgtgtacttctgaaatgtactttccagact 31595026  T
Q  124 ggatttataaggatcttgagc 144  Q
    |||||||||||||||||||||    
T  31595025 ggatttataaggatcttgagc 31595005  T

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Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 31614609 - 31614489
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    |||||||| |||||||| ||||| || || |||||||| || ||||||||||| |||||||| ||||||||||| || || |||||||||||| ||||||    
T  31614609 gatgtatatagttatggaatgttgattcttgaaatgattggaggaagaaagaactatgacactggagggtcatgcacttctgaaatgtactttccagatt 31614510  T
Q  124 ggatttataaggatcttgagc 144  Q
    ||||||||||| |||||||||    
T  31614509 ggatttataagaatcttgagc 31614489  T

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Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 31608328 - 31608208
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    |||||||| |||||||| ||||| || || |||||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||||||| |||| |    
T  31608328 gatgtatatagttatggcatgttgattcttgaaatgattggaggaaggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagact 31608229  T
Q  124 ggatttataaggatcttgagc 144  Q
    |||||||||||||||||||||    
T  31608228 ggatttataaggatcttgagc 31608208  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 31585478 - 31585358
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    ||||| || |||||||| ||| | || |||||||| ||||| || || ||||| || ||||| ||||| |||||| | || |||||||||||| ||||||    
T  31585478 gatgtgtatagttatggcatgctgattctagaaattatcggaggtaggaagaactacgacacaggaggttcatgtgcttctgaaatgtactttccagatt 31585379  T
Q  124 ggatttataaggatcttgagc 144  Q
    |||||||||||||||||||||    
T  31585378 ggatttataaggatcttgagc 31585358  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 31439258 - 31439306
Alignment:
Q  105 gaaatgtacttttcagattggatttataaggatcttgagctaagtaata 153  Q
    |||||||||||| | |||||||| |||||||||||||||| | ||||||    
T  31439258 gaaatgtactttccggattggatatataaggatcttgagcaaggtaata 31439306  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 52174475 - 52174659
Alignment:
Q  28 tatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggat 127  Q
    ||||||||||||| ||||| || || |||||||| || ||||||||||| |||||||| |||||||||||||| || |||||||||||| |||| |||||    
T  52174475 tatacagttatggcatgttgattcttgaaatgattggaggaagaaagaactatgacactggagggtcatgtacttcagaaatgtactttccagactggat 52174574  T
Q  128 ttataaggatcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattact 209  Q
    ||||||||||||||||| | | ||||  |||   |||||||   ||| |||||| ||||||||||||||||  | ||||||||||    
T  52174575 ttataaggatcttgagcaaggaaatactctttcaaattgtttgacaatctcagaggaagaaaatgatatggttataaagattact 52174659  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 15063524 - 15063697
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    ||||||||||||||||| ||||| || || ||||||| ||| |||| ||||||||||||||| || |||||   |||| | |||   |||||| | ||||    
T  15063524 gatgtatacagttatggcatgttgattcttgaaatgaccggaggaaaaaagaattatgacactggcgggtctcatacaaccgaagcatactttccggatt 15063623  T
Q  124 ggatttataaggatcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatg 194  Q
    |||| | |||||||||||||| | |||||  ||||   ||| |||  |||| ||||||||||||||||||||||    
T  15063624 ggatatttaaggatcttgagcaaggtaattcccttttaaatagtttggcaatctcagaagaagaaaatgatatg 15063697  T

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Target: scaffold0394 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 2010 - 1890
Alignment:
Q  24 gatgtatacagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagatt 123  Q
    ||||||||||||||||| ||||| || || ||||||| ||| |||| ||||||||||||||| || |||||   | || | ||||  |||||||| ||||    
T  2010 gatgtatacagttatggcatgttgattcttgaaatgaccggaggaaaaaagaattatgacactggcgggtctcttgcagccgaaacatacttttcggatt 1911  T
Q  124 ggatttataaggatcttgagc 144  Q
    |||| | ||||||||||||||    
T  1910 ggatatttaaggatcttgagc 1890  T

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