View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4009_low_3 (Length: 487)
Name: NF4009_low_3
Description: NF4009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4009_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 36556638 - 36556364
Alignment:
| Q |
10 |
gcacagatgaagatgattctcttggattgtattctgatgttgatgacacttttagaactgcaaagaaacatattaaagctcatattcatgaaggaatggt |
109 |
Q |
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| T |
36556638 |
gcacagatgaagatgattctcttggattatattctgatgttgatgacacttttagaactgcaaagaaacatattaaagctcatattcatgaaggaatggt |
36556539 |
T |
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| Q |
110 |
tggtgatcatgatgattctcctgatgttgcacacaacaatgttaatgtgttgggacattgatttgtttggatcatgatgatgatggtgtttgaggagagg |
209 |
Q |
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| T |
36556538 |
tggtgatcatgatgattctcctgatgttgcacacaacaatgttaatgtgttgggacattgatttgtttggatcatgatgatgatggtgtttgaggagagg |
36556439 |
T |
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| Q |
210 |
nnnnnnnnctgcaagtgatgagttgggttt-agttagaataatcagttgcatttagttgcaaatcttagagttcca |
284 |
Q |
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| T |
36556438 |
-tttttttctgcaagtgatgagttgggtttaatttagaataatcagttgcatttagttgcaaatcttagagttcca |
36556364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 323 - 468
Target Start/End: Complemental strand, 36556337 - 36556190
Alignment:
| Q |
323 |
cccatctttattgttatgcagaattcattttaatttagttaaattccatttatttttgcctaagaagtttatatattcaac--nnnnnnnnnngtgatca |
420 |
Q |
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| T |
36556337 |
cccatctttattgttatgcagaattcattttaatttagttaaattccatttatttttgcctaagaagtttatatattcaacaaaaaaaaagaagtgatca |
36556238 |
T |
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| Q |
421 |
taacaagtatgcttaattacatatgttttcccaactatagaagtatac |
468 |
Q |
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| T |
36556237 |
taacaagtatgcttaattacatatgttttcccaactatagaagtatac |
36556190 |
T |
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